PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019175154.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 381aa MW: 42870.2 Da PI: 4.9967

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019175154.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.7	1.6e-11	214	257	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L XP_019175154.1 214 LMAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 257 589*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MEYYESGFLE ELVALRSDHS WETAESCFSC FPVGMNIVHN DDEFYCNNYN VISGNNIDLD 60 YEGKNPSLPL PSSATTASFD QGCSNFPPFD RYTLMSYSFD GEFYTPLPFG DELSPPLTAD 120 SYNTKHDTPP VAAAFHSGQE DLSAILDEVT NCFHHQQNLE AMEIGCNNNG SRPCKVEAAV 180 HHQSCGREVA SGGGMWPEKR SKVRNPHGQP SKNLMAERRR RKRLNDRLSM LRSVVPKISK 240 MDRTSILGDT IDYMKELLEK IKNLQGEMEM GQNQLIQNSI FKDVKPNEML VRNSPKFDVQ 300 RRGESDTKIE ICCAGKPSLL LSTVKTVESF GLEIQQCVIS CFNEFAMQAS CTEAMEHREI 360 LSAEDIKQEL FKNAGYGGRC L

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MEYYESGFLE ELVALRSDHS WETAESCFSC FPVGMNIVHN DDEFYCNNYN VISGNNIDLD  60
YEGKNPSLPL PSSATTASFD QGCSNFPPFD RYTLMSYSFD GEFYTPLPFG DELSPPLTAD  120
SYNTKHDTPP VAAAFHSGQE DLSAILDEVT NCFHHQQNLE AMEIGCNNNG SRPCKVEAAV  180
HHQSCGREVA SGGGMWPEKR SKVRNPHGQP SKNLMAERRR RKRLNDRLSM LRSVVPKISK  240
MDRTSILGDT IDYMKELLEK IKNLQGEMEM GQNQLIQNSI FKDVKPNEML VRNSPKFDVQ  300
RRGESDTKIE ICCAGKPSLL LSTVKTVESF GLEIQQCVIS CFNEFAMQAS CTEAMEHREI  360
LSAEDIKQEL FKNAGYGGRC L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	217	224	ERRRRKRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	3e-75	bHLH family protein