PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019175021.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 534aa MW: 60222.2 Da PI: 8.3949

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019175021.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48	2.3e-15	26	117	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 ffkv+ ++ ++++ l+lp +e+ +g+k kt tl +e+gr W+v + +++g+ +++kGW+ Fv+ +gL++g+f vF+++g +f +v XP_019175021.1 26 FFKVM--ASGFQTK-LTLPPIVCEKLEGDKVL-KTATLITEKGR-WDVGI-GHGSQGKLYFEKGWEVFVQNHGLRVGEFAVFEYIGGgICF--NV 112 88988..7777777.*********999887.6999885.*.4555555*************************876777..88 PP EEE-S CS B3 95 kvfrk 99 ++++k XP_019175021.1 113 SLLDK 117 77776 PP
2	B3	43.1	7.5e-14	430	519	3	90
EE-..-HHHHT..T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 3 kvltpsdvlks..grlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 ++l+++++l+s + +p +f+ ++++ ++ +tl+ +s r+ ++k++ ++ + ++t+GW eF n+L+egD+++Fkl ++ s+f XP_019175021.1 430 STLMKPYHLRSrsPYMHIPAEFCVANELY--QNARITLKGPSDeRQVSLKVCKGGRTKYAIITRGWPEFIAGNNLEEGDTCIFKLLRKrSSF 519 56677777776445689*******888..5567*666599*5555555599*********************88654666 PP

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence
MKHGTPLLLP PPPPGMEAKL QVGWRFFKVM ASGFQTKLTL PPIVCEKLEG DKVLKTATLI 60 TEKGRWDVGI GHGSQGKLYF EKGWEVFVQN HGLRVGEFAV FEYIGGGICF NVSLLDKSGS 120 EKVFSQSEEE QNMASKLNPL TQISQDETLP PLSIEIANID EKEGEDVAIK MEEDEDMITY 180 HLNARLAPLY AILAEIDNED LPSRTNIHEE RGHSRVNKRN ADQERNKENS IVALPAEIDR 240 EKACPSEVKI QEQHAIKVPV KSEVADEVPL QIELGNPGKG KRSVKRKRDD KTVPSQVKIQ 300 KRDINRCSTK QNRDDDKTPS QAKSQKHDLN RDDDKTPSQT KAQKHDMNKC SVKQETDDDN 360 APSPAITQKH EKNKSPVKND KNKSSLEQEN HKDQVPSKPK GCAQDKKGDT KRKRERKVNT 420 SSPEQCLQFS TLMKPYHLRS RSPYMHIPAE FCVANELYQN ARITLKGPSD ERQVSLKVCK 480 GGRTKYAIIT RGWPEFIAGN NLEEGDTCIF KLLRKRSSFD DAVVLEVEVL RAST

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence

MKHGTPLLLP PPPPGMEAKL QVGWRFFKVM ASGFQTKLTL PPIVCEKLEG DKVLKTATLI  60
TEKGRWDVGI GHGSQGKLYF EKGWEVFVQN HGLRVGEFAV FEYIGGGICF NVSLLDKSGS  120
EKVFSQSEEE QNMASKLNPL TQISQDETLP PLSIEIANID EKEGEDVAIK MEEDEDMITY  180
HLNARLAPLY AILAEIDNED LPSRTNIHEE RGHSRVNKRN ADQERNKENS IVALPAEIDR  240
EKACPSEVKI QEQHAIKVPV KSEVADEVPL QIELGNPGKG KRSVKRKRDD KTVPSQVKIQ  300
KRDINRCSTK QNRDDDKTPS QAKSQKHDLN RDDDKTPSQT KAQKHDMNKC SVKQETDDDN  360
APSPAITQKH EKNKSPVKND KNKSSLEQEN HKDQVPSKPK GCAQDKKGDT KRKRERKVNT  420
SSPEQCLQFS TLMKPYHLRS RSPYMHIPAE FCVANELYQN ARITLKGPSD ERQVSLKVCK  480
GGRTKYAIIT RGWPEFIAGN NLEEGDTCIF KLLRKRSSFD DAVVLEVEVL RAST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	1e-10	B3 family protein