PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019174884.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 386aa MW: 42301.2 Da PI: 6.5117

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019174884.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.5	3.2e-10	233	281	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L+el+P + +k Ka +L + ++Y++sLq XP_019174884.1 233 NSHSLAERVRRERISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 281 58************************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MGTEDNNGDM GLQQHRANVS ISMAMSSESS FRSPPTGMDS LSFCASGWDP MVPVNQSLHY 60 PVAIDNQPMS STSHLVHYPS GGSDVVDMVP KVPAFGNEGF SEMVSSFGLP DCRLNYMHNI 120 GVATNRPFSR GQHSQEDCLN LEEATMGKKR RSSEALSPSI ASKNVEREQP KDPLGDNSEC 180 SKEDEKKHKT EQNNSSSLRS KQAGKQVKDT SSSGEPPKEN YVHVRAKRGQ ATNSHSLAER 240 VRRERISERM RLLQELVPGC NKITGKAVML DEIINYVQSL QQQVEFLSMK LATVNPELNF 300 DIERILSKDI LHAQGNNGAL LGLGPGLNSP HPFPGAPLGT FNNVPNATPF HSLPQNVWEN 360 DLQSILQMGF DSNSSLNNMG PNGNRS

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MGTEDNNGDM GLQQHRANVS ISMAMSSESS FRSPPTGMDS LSFCASGWDP MVPVNQSLHY  60
PVAIDNQPMS STSHLVHYPS GGSDVVDMVP KVPAFGNEGF SEMVSSFGLP DCRLNYMHNI  120
GVATNRPFSR GQHSQEDCLN LEEATMGKKR RSSEALSPSI ASKNVEREQP KDPLGDNSEC  180
SKEDEKKHKT EQNNSSSLRS KQAGKQVKDT SSSGEPPKEN YVHVRAKRGQ ATNSHSLAER  240
VRRERISERM RLLQELVPGC NKITGKAVML DEIINYVQSL QQQVEFLSMK LATVNPELNF  300
DIERILSKDI LHAQGNNGAL LGLGPGLNSP HPFPGAPLGT FNNVPNATPF HSLPQNVWEN  360
DLQSILQMGF DSNSSLNNMG PNGNRS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	148	189	KKRRSSEALSPSIASKNVEREQPKDPLGDNSECSKEDEKKHK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	7e-61	bHLH family protein