PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019174409.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 531aa    MW: 59168.4 Da    PI: 8.1595
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019174409.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.41.2e-1816991099
                    HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                    + +s  l +p kfa++++g++  s + +l  +sg++W v +  ++ +g+ ++ +GW  Fvk++ L+ gD++vF++dg+ +f  +v+vf++
  XP_019174409.1 16 SISSEKLKIPSKFAKHMDGVT--SGMASLVGPSGNTWYVGV--SQLDGGLFFHDGWTVFVKDHCLEYGDSLVFRYDGDLDF--HVQVFDE 99
                    456677********8889995..459***************..9********************************98888..***9985 PP
2B358.71.1e-18243338199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     f kv+++ +v+ s  l +p +fa+eh   ++++++++l++++g+sW v+ i  ++ + ++++ +GW  Fv++n+L+ gD+++F+l++  ++el+v
  XP_019174409.1 243 FTKVMKRFNVSGSFTLNVPYQFATEHL--PKCKVKIMLRNLKGQSWVVNSIPtTRVQTSHTFCGGWLAFVRDNNLDLGDICIFELVH--KGELRV 333
                     88999999******************6..34999****************77566666699***********************987..777899 PP

                     EEE-S CS
              B3  95 kvfrk 99 
                     +++r 
  XP_019174409.1 334 RILRV 338
                     99985 PP
3B349.76.6e-164335171097
                     HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      + s  l +p +f  eh   +++ ++++l++++g+sW+v+   + + ++ +++ +GW  Fv++n+++ gD+++F+l+g+ e  ++v+++
  XP_019174409.1 433 ISGSYTLKVPYQFSMEHL--PNCRTQIILRNLKGQSWTVNSVPTTRVQTlHTFCGGWMAFVRDNDIQMGDICIFELVGKCE--MRVHIC 517
                     455667999****99996..458889***************6655555579999**********************99544..577776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    
MSNGRKPHFL HGFNPSISSE KLKIPSKFAK HMDGVTSGMA SLVGPSGNTW YVGVSQLDGG  60
LFFHDGWTVF VKDHCLEYGD SLVFRYDGDL DFHVQVFDEG SCEKEAAFCA DCSQDVTNFE  120
NHAIKKRDRK SLGLLDCIAE GVPKRMRSTE IHSECPTSGQ ENPVTSSKED YVCGGELVCL  180
REMEIDGNPL KDFVTIAVPS QGKCVYENSD ATISSWTNDE DVWLSTQEAE RAARSFTSSF  240
PNFTKVMKRF NVSGSFTLNV PYQFATEHLP KCKVKIMLRN LKGQSWVVNS IPTTRVQTSH  300
TFCGGWLAFV RDNNLDLGDI CIFELVHKGE LRVRILRVEK EGVNDHSSVT AHKPVANVKG  360
KHRSTLKSSF LHTQLNATGG QSVTRKCTSS QDKLGSSTKG CMSLKSAPEE KIAAQAFISS  420
FPHFVRVMKK FNISGSYTLK VPYQFSMEHL PNCRTQIILR NLKGQSWTVN SVPTTRVQTL  480
HTFCGGWMAF VRDNDIQMGD ICIFELVGKC EMRVHICAIG KKGLDYQNGS I
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-20B3 family protein