PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019174275.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GeBP

Protein Properties

Length: 364aa MW: 40873.5 Da PI: 7.301

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019174275.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	111.8	4.6e-35	141	235	4	98
DUF573 4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 +r wse+Dei+lL G+i++++k++++p+ d+daf++f++ks++f+vsk+ql +Ki+r +kK+ ++ k k+gke+sfsk+h+qk++els+kiWg+ XP_019174275.1 141 SRDWSEDDEIALLEGMIEYTEKENADPHTDLDAFHDFIRKSLHFTVSKNQLQNKIKRVRKKYINNAGKGKKGKEKSFSKPHEQKTYELSRKIWGK 235 688******************************************************************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MAKNRSETKK SVAEEEDSST DNEGSESESE SEPEKTQTQM QIAKSPSAAA TKVTEASSTH 60 AKIQAASSSS YETDTESDSE SESESQRPAP IVKPTDHPRE SAQTKPRKSG AEAKRPAPAA 120 DRENSPRRLN HRQTIRRNSY SRDWSEDDEI ALLEGMIEYT EKENADPHTD LDAFHDFIRK 180 SLHFTVSKNQ LQNKIKRVRK KYINNAGKGK KGKEKSFSKP HEQKTYELSR KIWGKGDEKI 240 EDKLGDSSSQ VRLVHALMAC NGEEKINKNS MKKAPVIEDA IETPEAAASS GWKNGVKRME 300 AENKAELNSL SQFMEKNKGI VIGEEKRNEI EKKRKAVVVA EIDLFLKELE LIQEQVKATL 360 EAMK

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MAKNRSETKK SVAEEEDSST DNEGSESESE SEPEKTQTQM QIAKSPSAAA TKVTEASSTH  60
AKIQAASSSS YETDTESDSE SESESQRPAP IVKPTDHPRE SAQTKPRKSG AEAKRPAPAA  120
DRENSPRRLN HRQTIRRNSY SRDWSEDDEI ALLEGMIEYT EKENADPHTD LDAFHDFIRK  180
SLHFTVSKNQ LQNKIKRVRK KYINNAGKGK KGKEKSFSKP HEQKTYELSR KIWGKGDEKI  240
EDKLGDSSSQ VRLVHALMAC NGEEKINKNS MKKAPVIEDA IETPEAAASS GWKNGVKRME  300
AENKAELNSL SQFMEKNKGI VIGEEKRNEI EKKRKAVVVA EIDLFLKELE LIQEQVKATL  360
EAMK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	7e-20	GeBP family protein