PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019174264.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 733aa MW: 83546.8 Da PI: 6.908

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019174264.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.8	4.9e-20	71	157	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+YA++vGFsvrk +++ + ++++ ++ f+Csk g++ +e+ + ++ tr gC a+++ +dg w vtk ++ HnHel+ XP_019174264.1 71 LYNNYAYRVGFSVRKGNQRCKVYSKTVQMKMFMCSKAGFKVKENAG--VRAYSKIDTRSGCGACVQFDVGEDGLWTVTKHVKVHNHELC 157 7**************************************99887..888899********************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 733 aa Download sequence
MDDAVDQRDE ALDQRDEAGD ELHTVPVSED VVVDSPSSDP IELDIDGSSS NPVDEDLVGV 60 VVSNGVEAYE LYNNYAYRVG FSVRKGNQRC KVYSKTVQMK MFMCSKAGFK VKENAGVRAY 120 SKIDTRSGCG ACVQFDVGED GLWTVTKHVK VHNHELCAVD KSHLLRSHRN VGDNQLLYLK 180 DLKKSGVAMA DGIRFLKHQA GGSPLVGFTN RDAYNSIASD TSKRLDGTDS NSLIEIFRKR 240 QSTEYDFFFD FEVDCDSRLC SFFWRDGRMR QDYELFGDLL VHDTTYRTNK YDMICGPFVG 300 MNHHCMNVMF GCGFLMNERI ESFVWLFRAF LRSMNGKCPQ TIMTDQCASM AAAICQVFPT 360 SRHRLCIWHI GENSKKHIKA LRNNKDFLDM FNCVLKYTET EAEFEFYWTR LVTDYKCHKN 420 SWIQKLYDCR EKWCPAFNKD YFSGGILSSQ RSETTNHSIS RRMSKTAGLC DFYSSFVSVT 480 SEWRSKENGE DFRCTQGVPN MMMEHVKLLL HAREVYTIEI YFLFEEQFMK GNACHQEMVL 540 NEGCQFKYHV WRPDIDIIRH EVSFKLSTLD ISCSCKLISE LGILCCHCLR ILHIHCVSSI 600 PNKYIMKRWT KKVADGRDVN TGSMFCRAGV PPSIWVVEIC RKFQRLISSS QDNSVTRQFC 660 DEAVEEAKKK YSAARGRRSA ANKVASSTKG AVQSLVLESL SEIAGDGYLV HPSSGSSEFC 720 QCSNDVDDNA VVD

Sequence ? help Back to Top

Protein Sequence Length: 733 aa Download sequence

MDDAVDQRDE ALDQRDEAGD ELHTVPVSED VVVDSPSSDP IELDIDGSSS NPVDEDLVGV  60
VVSNGVEAYE LYNNYAYRVG FSVRKGNQRC KVYSKTVQMK MFMCSKAGFK VKENAGVRAY  120
SKIDTRSGCG ACVQFDVGED GLWTVTKHVK VHNHELCAVD KSHLLRSHRN VGDNQLLYLK  180
DLKKSGVAMA DGIRFLKHQA GGSPLVGFTN RDAYNSIASD TSKRLDGTDS NSLIEIFRKR  240
QSTEYDFFFD FEVDCDSRLC SFFWRDGRMR QDYELFGDLL VHDTTYRTNK YDMICGPFVG  300
MNHHCMNVMF GCGFLMNERI ESFVWLFRAF LRSMNGKCPQ TIMTDQCASM AAAICQVFPT  360
SRHRLCIWHI GENSKKHIKA LRNNKDFLDM FNCVLKYTET EAEFEFYWTR LVTDYKCHKN  420
SWIQKLYDCR EKWCPAFNKD YFSGGILSSQ RSETTNHSIS RRMSKTAGLC DFYSSFVSVT  480
SEWRSKENGE DFRCTQGVPN MMMEHVKLLL HAREVYTIEI YFLFEEQFMK GNACHQEMVL  540
NEGCQFKYHV WRPDIDIIRH EVSFKLSTLD ISCSCKLISE LGILCCHCLR ILHIHCVSSI  600
PNKYIMKRWT KKVADGRDVN TGSMFCRAGV PPSIWVVEIC RKFQRLISSS QDNSVTRQFC  660
DEAVEEAKKK YSAARGRRSA ANKVASSTKG AVQSLVLESL SEIAGDGYLV HPSSGSSEFC  720
QCSNDVDDNA VVD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-81	FAR1 family protein