PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019174243.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 762aa MW: 85698.5 Da PI: 8.652

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019174243.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.4	2e-22	70	168	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY+ Y++ GF+vr s+ k+ r+g +++r +vCs++g + +k ++k+rr+r+++r+gC+akl +kk+++g+++v+k++++H XP_019174243.1 70 EFYKIYGRASGFDVRHSSVKRD-RSGDVIRRSLVCSRQGAKGGGGRKptldvrgtssSNKQRRRRVSNRVGCNAKLGLKKKSTGEFVVSKFVEDH 163 6**************99998.7788**********99999999***9999******************************* PP FAR1 86 nHela 90 nH+l+ XP_019174243.1 164 NHSLC 168 **8 PP

Sequence ? help Back to Top
Protein Sequence Length: 762 aa Download sequence
MDAHGDGHPT AGAVEHGVTG SIDGDFGTRD ATHYTPGKTN TLNQHWKPNV DTTIIPVLGQ 60 CFKSVYEGVE FYKIYGRASG FDVRHSSVKR DRSGDVIRRS LVCSRQGAKG GGGRKPTLDV 120 RGTSSSNKQR RRRVSNRVGC NAKLGLKKKS TGEFVVSKFV EDHNHSLCSE GAKLFMRGNR 180 KLNVAQQAFL ADCLKVNVGP STGYRLCREV AGSFENVGAT YVEFHNFKRD LQTYVDVADG 240 EMIIERFKTK REACDSFFFD YHLDEENRIA RLFWADPIGR RSFSCYGDVI SFDATYSTNR 300 YNLVFVPFTG VDNHKRCITF AVGLLSKEDV ESYSWLLERF NLAMGKAPLC AVTDQDPAMK 360 IAMEQVLPGC RHRFCMWHIM TKVSEKVGPE LSNNEEFRKS LNDIVWNETT STGDYEVQWQ 420 LLMEKYNLSD HRWFQKLYAE RNHWIPAFFL DLPMSGLVRT TSRSEAQNSV YGKFTRLHSS 480 LVEFYMQTES VLDTQRHNQA KLDAQCEGSL PEFKTPLALE RHAADLFTLT IFYALQKEIE 540 AACFYCEVVG IREDGGTIYY NIGGDCTTTH TVQYKPSGCI AFCSYKMFQR LGLICRHMFL 600 VFKSAHIEQL PSQYVVERWR KHLGCGACRG RRSDGDPPKS GASELWSDIQ TCVGMVGESM 660 VRQARMVEVL KELRDEFASD GTIICEAKGN RAAIEALCGV KPPPCITIKP PAQAKNKGSG 720 KRIKSTREIA IENSGKAGRK CGVCGEYARH NARSCPSKQR AV

Sequence ? help Back to Top

Protein Sequence Length: 762 aa Download sequence

MDAHGDGHPT AGAVEHGVTG SIDGDFGTRD ATHYTPGKTN TLNQHWKPNV DTTIIPVLGQ  60
CFKSVYEGVE FYKIYGRASG FDVRHSSVKR DRSGDVIRRS LVCSRQGAKG GGGRKPTLDV  120
RGTSSSNKQR RRRVSNRVGC NAKLGLKKKS TGEFVVSKFV EDHNHSLCSE GAKLFMRGNR  180
KLNVAQQAFL ADCLKVNVGP STGYRLCREV AGSFENVGAT YVEFHNFKRD LQTYVDVADG  240
EMIIERFKTK REACDSFFFD YHLDEENRIA RLFWADPIGR RSFSCYGDVI SFDATYSTNR  300
YNLVFVPFTG VDNHKRCITF AVGLLSKEDV ESYSWLLERF NLAMGKAPLC AVTDQDPAMK  360
IAMEQVLPGC RHRFCMWHIM TKVSEKVGPE LSNNEEFRKS LNDIVWNETT STGDYEVQWQ  420
LLMEKYNLSD HRWFQKLYAE RNHWIPAFFL DLPMSGLVRT TSRSEAQNSV YGKFTRLHSS  480
LVEFYMQTES VLDTQRHNQA KLDAQCEGSL PEFKTPLALE RHAADLFTLT IFYALQKEIE  540
AACFYCEVVG IREDGGTIYY NIGGDCTTTH TVQYKPSGCI AFCSYKMFQR LGLICRHMFL  600
VFKSAHIEQL PSQYVVERWR KHLGCGACRG RRSDGDPPKS GASELWSDIQ TCVGMVGESM  660
VRQARMVEVL KELRDEFASD GTIICEAKGN RAAIEALCGV KPPPCITIKP PAQAKNKGSG  720
KRIKSTREIA IENSGKAGRK CGVCGEYARH NARSCPSKQR AV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-91	FAR1 family protein