PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019174185.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

SRS

Protein Properties

Length: 360aa MW: 38301 Da PI: 7.999

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019174185.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	228.3	1.4e-70	148	301	5	154
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa......aeaaskrkrelkskkqsalsstklss 93 + +CqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerqq+la++++++++++ +aa++++++ ++ s+l +t+l++ XP_019174185.1 148 GLNCQDCGNQAKKDCTHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQHLASLQQQQQQQQnlslrgGSAAADNPKR-LRESPSSLVCTRLPT 241 579**************************************************999988888999975555555555.478899******* PP DUF702 94 aeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++s e+ t+ +P+ev+s+avfrcv+vs++dd+ +++aYqtavsigGhvfkGiLydqG+e+ XP_019174185.1 242 TSSGLEVGTH-YPAEVNSPAVFRCVKVSAMDDEVDQYAYQTAVSIGGHVFKGILYDQGPES 301 999888776.***********************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MSGFFSLGGG PAGGNKDQEQ DEDQNLGATN NNSSLYLFKN EEIYNKGFEL WQQYYQMHQN 60 RAHHVQHHHQ QPHLVDFSVG VGGGGGGQPN NHPAGGGGGS SSSSGNLVGD DQNQSGGGGY 120 SFRSSSSGFR VMRPSGGTSG SGGGGGAGLN CQDCGNQAKK DCTHMRCRTC CKSRGFQCQT 180 HVKSTWVPAA KRRERQQHLA SLQQQQQQQQ NLSLRGGSAA ADNPKRLRES PSSLVCTRLP 240 TTSSGLEVGT HYPAEVNSPA VFRCVKVSAM DDEVDQYAYQ TAVSIGGHVF KGILYDQGPE 300 SRYNSSSVAG EGSSSQPLNL ISGATATHHQ APITMLDPSL YPTPLNLIMA GTQFFPPPRP

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MSGFFSLGGG PAGGNKDQEQ DEDQNLGATN NNSSLYLFKN EEIYNKGFEL WQQYYQMHQN  60
RAHHVQHHHQ QPHLVDFSVG VGGGGGGQPN NHPAGGGGGS SSSSGNLVGD DQNQSGGGGY  120
SFRSSSSGFR VMRPSGGTSG SGGGGGAGLN CQDCGNQAKK DCTHMRCRTC CKSRGFQCQT  180
HVKSTWVPAA KRRERQQHLA SLQQQQQQQQ NLSLRGGSAA ADNPKRLRES PSSLVCTRLP  240
TTSSGLEVGT HYPAEVNSPA VFRCVKVSAM DDEVDQYAYQ TAVSIGGHVF KGILYDQGPE  300
SRYNSSSVAG EGSSSQPLNL ISGATATHHQ APITMLDPSL YPTPLNLIMA GTQFFPPPRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	2e-67	SRS family protein