PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019174114.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 442aa MW: 46969.1 Da PI: 7.913

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019174114.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.5	6.2e-05	317	355	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq XP_019174114.1 317 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 355 7788899*******998.....8****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence
MESAHLHNHH LHHQHHQQSF QDSPPPPPSS SSPSSSYGVS TSSTAQYSWT PNTTLLSGGA 60 GGGGLSSLYA NGVAAAGSIL SSRNHHHQVS VCNAPMAQDL SFHHWANAAA AGFGGGGGGS 120 GQTIKQELSS PDCYPRLADN MNTLDAKLLL GTLSGGGHQP AAAAHQFYCS STASSNTNTN 180 TNRGRFSQIY PTISVPSLNQ EASSSLANSS SLGMNLQALD LFNSATINGG FVHTSPDDHQ 240 HLGFHNFASF DHHHLQQSSQ RPFPSNVSSP SLFSHATVAI SADPKRPCNL VEPNPPQAPP 300 KKSRLDSRAS CPPFKVRKEK LGDRIAALQQ LVAPFGKTDT ASVLMEAIGY IKFLQNQVET 360 LSVPYMKLSR NKNSGRAMQG VNVCDIIYGQ EEIINIGSEE ARRGLRSRGL CLVPLSCLSY 420 VTDSGGGVWP PPPSLEHFSP IQ

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence

MESAHLHNHH LHHQHHQQSF QDSPPPPPSS SSPSSSYGVS TSSTAQYSWT PNTTLLSGGA  60
GGGGLSSLYA NGVAAAGSIL SSRNHHHQVS VCNAPMAQDL SFHHWANAAA AGFGGGGGGS  120
GQTIKQELSS PDCYPRLADN MNTLDAKLLL GTLSGGGHQP AAAAHQFYCS STASSNTNTN  180
TNRGRFSQIY PTISVPSLNQ EASSSLANSS SLGMNLQALD LFNSATINGG FVHTSPDDHQ  240
HLGFHNFASF DHHHLQQSSQ RPFPSNVSSP SLFSHATVAI SADPKRPCNL VEPNPPQAPP  300
KKSRLDSRAS CPPFKVRKEK LGDRIAALQQ LVAPFGKTDT ASVLMEAIGY IKFLQNQVET  360
LSVPYMKLSR NKNSGRAMQG VNVCDIIYGQ EEIINIGSEE ARRGLRSRGL CLVPLSCLSY  420
VTDSGGGVWP PPPSLEHFSP IQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	4e-53	bHLH family protein