PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019174106.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 285aa    MW: 31329.9 Da    PI: 7.3132
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019174106.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.61.4e-17187224136
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 
                     C++C+t++  Tp++Rrgp g++tLCnaCGl+++ kg++
  XP_019174106.1 187 CTHCNTSSkaTPMMRRGPAGPRTLCNACGLFWANKGTM 224
                     ***********************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    
MQPTSAPGHF PGGGDCAAGK EEHTNNAGIG YEVQCIEGGA IGGFDGVEVP VPYGSVFTAA  60
DAAYAPDQLT LSFRGQVYVF DAVTLEKVQS VLLLLGGYEY TPGAFTTQRN TDYSARCSDP  120
KRAESLNRFR QKRKERCYGR KIRYNIRHEV AVRMQRRKGQ FASKNTIAGN AQMESGQDDN  180
SHQEIWCTHC NTSSKATPMM RRGPAGPRTL CNACGLFWAN KGTMRVLPKR RCSNTLTEME  240
DEDEDDSDSD YGMPLPLRYN IDYMASSSAG DSSAVLSPER GCQRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.27e-66GATA family protein