PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019173950.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 536aa MW: 60998.5 Da PI: 9.6916

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019173950.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.7	1.3e-08	329	368	2	44
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 ++W++eE l++++vk+ G++ Wkt a ++g k ++++ w XP_019173950.1 329 NKWSEEEKALILEYVKLNGNE-WKTLADKLGshK----IHVRDTW 368 69*****************.******9544....5666655 PP

Sequence ? help Back to Top
Protein Sequence Length: 536 aa Download sequence
MVMAVEDEVV GALKKSEKSK KRKERNNDML AANPVYIVKD VGVKGDKSFE EETKMKSDNE 60 GVERMKKKKK SAGDNKRGAL MEDANGITVE KAAKKKRKRE VQSKNNESQD TANDVSVDNG 120 DYVNSTATEM LESKSKHEKM ARTITDSCTE GKMDKVKWKN KNMKEKGEDD QGSVDVATGL 180 TCAEGIADFS VNVTQASGVG NDNISRKQVK DSSKDPKRKN SKKKVIFSNE LKVSPKSNVP 240 QSGKGQNKVV ELIRGKRFSK IEDEIVKQAV FKYIEAYNLG EEGLDMVLNC RSHPEVKNCW 300 KEIGAAIRNR PYLSVYHRAQ ILFRRSESNK WSEEEKALIL EYVKLNGNEW KTLADKLGSH 360 KIHVRDTWRR IYLPNLKKGP WSQDEYQNLF DFVNSDLQLR ILKEKRSRHG MLRDNISFTA 420 ISNKLSTRTC GKCCSKWYSH LSSPMVAEGI WSDSDDYRLI GALYTLDATC IENVDWDNLL 480 EHRPGELCLK RWKQMVLLIG NHGSKPFSEQ VEVLAKRYCP SLIEVREAWD SKPVVP

Sequence ? help Back to Top

Protein Sequence Length: 536 aa Download sequence

MVMAVEDEVV GALKKSEKSK KRKERNNDML AANPVYIVKD VGVKGDKSFE EETKMKSDNE  60
GVERMKKKKK SAGDNKRGAL MEDANGITVE KAAKKKRKRE VQSKNNESQD TANDVSVDNG  120
DYVNSTATEM LESKSKHEKM ARTITDSCTE GKMDKVKWKN KNMKEKGEDD QGSVDVATGL  180
TCAEGIADFS VNVTQASGVG NDNISRKQVK DSSKDPKRKN SKKKVIFSNE LKVSPKSNVP  240
QSGKGQNKVV ELIRGKRFSK IEDEIVKQAV FKYIEAYNLG EEGLDMVLNC RSHPEVKNCW  300
KEIGAAIRNR PYLSVYHRAQ ILFRRSESNK WSEEEKALIL EYVKLNGNEW KTLADKLGSH  360
KIHVRDTWRR IYLPNLKKGP WSQDEYQNLF DFVNSDLQLR ILKEKRSRHG MLRDNISFTA  420
ISNKLSTRTC GKCCSKWYSH LSSPMVAEGI WSDSDDYRLI GALYTLDATC IENVDWDNLL  480
EHRPGELCLK RWKQMVLLIG NHGSKPFSEQ VEVLAKRYCP SLIEVREAWD SKPVVP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	63	69	ERMKKKK
2	66	98	KKKKKSAGDNKRGALMEDANGITVEKAAKKKRK
3	67	99	KKKKKSAGDNKRGALMEDANGITVEKAAKKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41020.1	1e-118	MYB_related family protein