PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019173913.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 442aa MW: 49902.8 Da PI: 7.832

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019173913.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.8	1.1e-17	201	247	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd ll+++v+++G + W+ Ia+ + gR +kqc++rw+++l XP_019173913.1 201 KGQWTVEEDRLLIQLVEKHGVRKWSHIAQLLK-GRIGKQCRERWHNHL 247 799**************************9.***********97 PP
2	Myb_DNA-binding	57.3	3.5e-18	253	295	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W++eEde+l++a+ + G++ W+ Ia++++ gRt++++k++w+ XP_019173913.1 253 KDVWSEEEDEILIKAHVEVGNK-WAEIAKRLP-GRTENSIKNHWN 295 578*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence
MEFDSNSTHV SHALQPFPMS TNYFKSEFDD VFHTDSKAVY NFQDLHPFDH HFSSSSTSPL 60 VGPSPISFYP DLAIQMNGFD PFDPFSNDNS PASHHNNLNL FKPSQEHSEI AHNNNNGGAV 120 VGGYLSYPNP KTLSFHHDLK PTNVVVPDES SCISANPGFR KETSGRKRSS RAHQTTDNNN 180 NGASASMKKH SKGRKKTKSS KGQWTVEEDR LLIQLVEKHG VRKWSHIAQL LKGRIGKQCR 240 ERWHNHLRPN IKKDVWSEEE DEILIKAHVE VGNKWAEIAK RLPGRTENSI KNHWNATKRR 300 QFSRRKCRTK WPRPSSLLQN YIKTVLNSEK NGGAGANRRN SSTNAEASTM AVVVAPPPPP 360 PPPKAEPMEY CSGDRLVSDY DFALDEKLFG GNGIESFIED IPGGPLELDE KYMEEMAYDM 420 PPMMFGEPKE LDLMDMISHV NL

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence

MEFDSNSTHV SHALQPFPMS TNYFKSEFDD VFHTDSKAVY NFQDLHPFDH HFSSSSTSPL  60
VGPSPISFYP DLAIQMNGFD PFDPFSNDNS PASHHNNLNL FKPSQEHSEI AHNNNNGGAV  120
VGGYLSYPNP KTLSFHHDLK PTNVVVPDES SCISANPGFR KETSGRKRSS RAHQTTDNNN  180
NGASASMKKH SKGRKKTKSS KGQWTVEEDR LLIQLVEKHG VRKWSHIAQL LKGRIGKQCR  240
ERWHNHLRPN IKKDVWSEEE DEILIKAHVE VGNKWAEIAK RLPGRTENSI KNHWNATKRR  300
QFSRRKCRTK WPRPSSLLQN YIKTVLNSEK NGGAGANRRN SSTNAEASTM AVVVAPPPPP  360
PPPKAEPMEY CSGDRLVSDY DFALDEKLFG GNGIESFIED IPGGPLELDE KYMEEMAYDM  420
PPMMFGEPKE LDLMDMISHV NL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	2e-77	MYB family protein