PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019173827.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TCP

Protein Properties

Length: 487aa MW: 50645.4 Da PI: 6.425

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019173827.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123.9	1.8e-38	110	189	4	82
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssa 82 k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLl qa+pai+++tgt++++a+++ ++s + + XP_019173827.1 110 VKRPTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLHQAEPAIIAATGTGTIPANFStLNVSLRGGG 189 589****************************************************************8884444433333 PP

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence
MELTNSQSNN IPNNSSSTSV VATAPQPFHR HQHGSVRPSS VPFITSISIQ AAAAAAHQAP 60 HASTLSSTSS VSASTTAAPP SRLVDASLAI ATRSEPLVEP SEEPQQQQAV KRPTKDRHTK 120 VDGRGRRIRM PAACAARVFQ LTRELGHKSD GETIEWLLHQ AEPAIIAATG TGTIPANFST 180 LNVSLRGGGA GLAAPLSKSA PYPFHSTLAL ATAAAAAHPY EESFSHMLGF HHQHAPPQLL 240 TPSQIAETIS AAGGGGGGGG GGGEGTTEDY LRKRYREDLF KDEGASSNPQ GEPSGNSTSP 300 SNKQFKGGAS ASAAAAAGAF PSILRQTTAP MPGTTMWAVA PAPSSGGTFW MLPFTAGGSG 360 ESGQALPAPA AESTSGGDSP SETQMWSFPN NNSNQTLHSH LQFTPRFNNL PAANLDFHAP 420 PPSHHLGLGM SDGNLGMLAA FNNAYSRTRN GPNINSEEQP QQQQQHQAQD DSDENEGEDN 480 DPNNSCT

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence

MELTNSQSNN IPNNSSSTSV VATAPQPFHR HQHGSVRPSS VPFITSISIQ AAAAAAHQAP  60
HASTLSSTSS VSASTTAAPP SRLVDASLAI ATRSEPLVEP SEEPQQQQAV KRPTKDRHTK  120
VDGRGRRIRM PAACAARVFQ LTRELGHKSD GETIEWLLHQ AEPAIIAATG TGTIPANFST  180
LNVSLRGGGA GLAAPLSKSA PYPFHSTLAL ATAAAAAHPY EESFSHMLGF HHQHAPPQLL  240
TPSQIAETIS AAGGGGGGGG GGGEGTTEDY LRKRYREDLF KDEGASSNPQ GEPSGNSTSP  300
SNKQFKGGAS ASAAAAAGAF PSILRQTTAP MPGTTMWAVA PAPSSGGTFW MLPFTAGGSG  360
ESGQALPAPA AESTSGGDSP SETQMWSFPN NNSNQTLHSH LQFTPRFNNL PAANLDFHAP  420
PPSHHLGLGM SDGNLGMLAA FNNAYSRTRN GPNINSEEQP QQQQQHQAQD DSDENEGEDN  480
DPNNSCT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	8e-55	TCP family protein