PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019173388.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 529aa MW: 58518.4 Da PI: 6.4225

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019173388.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43	7.9e-14	339	384	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + ErrRR+++N++f++Lr+l+P+ K +Ka++L ++eY+ sL XP_019173388.1 339 HHVISERRRREKLNESFQQLRSLIPPG-----SKKDKASVLSNTTEYLASL 384 69999******************95.....599***********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence
MDFIFLLEEG ERIAFLHQLM QSLGCAYICL WSYLPQPCNY FVCLDGLFIG DNNVARRLFE 60 EYRHSLPIAN DGRVPGFAFR NNLQHLELRF EELQILASNP VQLQFYREAG IKTAILMGCR 120 AGEVEVGMST NPQVNMEMEM MRVLSQEPAS KPTTSSSTSL RSLSMESPTA TEYTSLLFNV 180 PIPSTSYNAP SDDLPSISGH VTQAAAAGVD PALSLIGTDN QFPFLSMRQT EEDDAMARAY 240 LAVISSTSSS SQARDSFASN FQNPSAFRIY RRRSSSLSSE NLSRNNVPAA VPPPIIRRRQ 300 GNMFRKCVAF FRNLDLLRRR GLIQGGGTSA APPSTTQVHH VISERRRREK LNESFQQLRS 360 LIPPGSKKDK ASVLSNTTEY LASLKAQVEE LTKKNQILEA QLPPPPPQKA PAAVKEEVGA 420 SSAAAAEGRV DVSITNVEES TSEEANRRFV DLRVLVRGEI SMSDLVIRLL EFLKGVENVG 480 LISVQANTTT VQSASLNRII LRLTIHEGDE WDESAFQEAV KRVVGDVAQ

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence

MDFIFLLEEG ERIAFLHQLM QSLGCAYICL WSYLPQPCNY FVCLDGLFIG DNNVARRLFE  60
EYRHSLPIAN DGRVPGFAFR NNLQHLELRF EELQILASNP VQLQFYREAG IKTAILMGCR  120
AGEVEVGMST NPQVNMEMEM MRVLSQEPAS KPTTSSSTSL RSLSMESPTA TEYTSLLFNV  180
PIPSTSYNAP SDDLPSISGH VTQAAAAGVD PALSLIGTDN QFPFLSMRQT EEDDAMARAY  240
LAVISSTSSS SQARDSFASN FQNPSAFRIY RRRSSSLSSE NLSRNNVPAA VPPPIIRRRQ  300
GNMFRKCVAF FRNLDLLRRR GLIQGGGTSA APPSTTQVHH VISERRRREK LNESFQQLRS  360
LIPPGSKKDK ASVLSNTTEY LASLKAQVEE LTKKNQILEA QLPPPPPQKA PAAVKEEVGA  420
SSAAAAEGRV DVSITNVEES TSEEANRRFV DLRVLVRGEI SMSDLVIRLL EFLKGVENVG  480
LISVQANTTT VQSASLNRII LRLTIHEGDE WDESAFQEAV KRVVGDVAQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	344	349	ERRRRE
2	345	350	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	8e-43	bHLH family protein