PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019173298.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 809aa MW: 93405.2 Da PI: 7.9615

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019173298.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.9	9e-20	115	207	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YAke+GF+vr +++++ r ge+ + + Cs+eg+++++k++ +ek++r+r+++r+gCk +++++k k+g + v+ +el H+H l+ XP_019173298.1 115 DFYEAYAKEAGFDVRHGTKRRN-RFGEVSIKYMLCSREGYKAKRKEStnssKEKKKRRRVSNRIGCKTRMVMTKCKTGGYIVHAMELRHTHCLC 207 6***************9999.7777999999******99999998899999********************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 809 aa Download sequence
MDLESNLVVG NDVEVDCSLV NIEGIDHKKH IGDLGIVEDM EYGMEVGNDK VSLGRIVVGK 60 DLEIEHHGQG QCSHYETQCA MEIRDDGAKY YTPATEKEMT PYEGQQFETV DIGIDFYEAY 120 AKEAGFDVRH GTKRRNRFGE VSIKYMLCSR EGYKAKRKES TNSSKEKKKR RRVSNRIGCK 180 TRMVMTKCKT GGYIVHAMEL RHTHCLCSDN GKPFLKINRQ LDIGHKTFLA HCAKANIGPT 240 KAFRLFKEMV GSFTDIGATC IDFCNFRRDL LAYIAEADAQ MLIEDMFKRK EDNPDFYFDF 300 DIDEEAQLTR LFWADAECRR NYACFGDVMS FDATYSTNRY KLVFVPFTGV DNHKRSITFG 360 AGLIAKEDVE SYEWLVMKFK AAMEYTPRCT TTDQDPALKI VVPQTMPTTR HRFCMWHIMS 420 KVGEKVGVAL WHNADFKKEL NNTVWDDTLT VDEFERKWTT LMKDYSLEEH RWFAQLYEAR 480 ASWIPAYFND ILMGGLLRTT SRSESENSYF GKFTNHHCSL VEFMAQYNSA IGEQRHRQLK 540 LIAENEGSYP ETKTPLSIEK HAARVYTINI FYEFQQEVWD ASFTCHITDK NSVGDIWTYK 600 VEERGKMFEV TENPSKEQIE CACKHFNRVG ILCRHALLVM KTRGYESIPQ KYIVPRWTRD 660 ARAQPLHDVP WARRTNIIKA NETTKVANQL WNEFYNCIGL ANGWPDKMDK MLATLQQLKK 720 DLERETQQTQ QSGNNESVFE RLIGSRRPGD IQIKPPQVAK NKGSGKRLKS NKEKAITNKQ 780 QKKGRTCNIC DLPGHNSRTC PDKLASHEV

Sequence ? help Back to Top

Protein Sequence Length: 809 aa Download sequence

MDLESNLVVG NDVEVDCSLV NIEGIDHKKH IGDLGIVEDM EYGMEVGNDK VSLGRIVVGK  60
DLEIEHHGQG QCSHYETQCA MEIRDDGAKY YTPATEKEMT PYEGQQFETV DIGIDFYEAY  120
AKEAGFDVRH GTKRRNRFGE VSIKYMLCSR EGYKAKRKES TNSSKEKKKR RRVSNRIGCK  180
TRMVMTKCKT GGYIVHAMEL RHTHCLCSDN GKPFLKINRQ LDIGHKTFLA HCAKANIGPT  240
KAFRLFKEMV GSFTDIGATC IDFCNFRRDL LAYIAEADAQ MLIEDMFKRK EDNPDFYFDF  300
DIDEEAQLTR LFWADAECRR NYACFGDVMS FDATYSTNRY KLVFVPFTGV DNHKRSITFG  360
AGLIAKEDVE SYEWLVMKFK AAMEYTPRCT TTDQDPALKI VVPQTMPTTR HRFCMWHIMS  420
KVGEKVGVAL WHNADFKKEL NNTVWDDTLT VDEFERKWTT LMKDYSLEEH RWFAQLYEAR  480
ASWIPAYFND ILMGGLLRTT SRSESENSYF GKFTNHHCSL VEFMAQYNSA IGEQRHRQLK  540
LIAENEGSYP ETKTPLSIEK HAARVYTINI FYEFQQEVWD ASFTCHITDK NSVGDIWTYK  600
VEERGKMFEV TENPSKEQIE CACKHFNRVG ILCRHALLVM KTRGYESIPQ KYIVPRWTRD  660
ARAQPLHDVP WARRTNIIKA NETTKVANQL WNEFYNCIGL ANGWPDKMDK MLATLQQLKK  720
DLERETQQTQ QSGNNESVFE RLIGSRRPGD IQIKPPQVAK NKGSGKRLKS NKEKAITNKQ  780
QKKGRTCNIC DLPGHNSRTC PDKLASHEV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	156	172	KRKESTNSSKEKKKRRR
2	167	172	KKKRRR
3	169	173	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-96	FAR1 family protein