PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019173295.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 789aa MW: 90105.5 Da PI: 8.6889

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019173295.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.6	8.4e-18	76	173	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 +fY+ YA+ +GF++r +++ + r+g + ++ Cs+eg++ ++ + te ++r+r ++r+gCka+++ +++k+g+++++ lel H XP_019173295.1 76 NFYQPYASIAGFDIRHGTKRLN-REGAVHLKHILCSREGYKPKKIGStvaadkgnsTEPKKRRRLSNRVGCKARIVFTRRKSGNYKIHALELWHK 169 6**************98888.7788**********9999889***9999********************************** PP FAR1 87 Hela 90 H l+ XP_019173295.1 170 HCLC 173 *998 PP

Sequence ? help Back to Top
Protein Sequence Length: 789 aa Download sequence
MDARPDSIDD SSIRNFNGNC DSMDEAPPGN QRSEAEPTEC NMVVLPNGTK QWLPNYKSES 60 TPYIGQEFAS LEDGINFYQP YASIAGFDIR HGTKRLNREG AVHLKHILCS REGYKPKKIG 120 STVAADKGNS TEPKKRRRLS NRVGCKARIV FTRRKSGNYK IHALELWHKH CLCSDIGKPF 180 LKINRQLDIG HKIFVANCAR ANIGSTKSWR LYKEMVGSFS DIGATSADFC NFRRDLLAYI 240 AGADAQMIVD DMFKNKEMEP DFYFDFDLNE ERELCRLFWA DTISRKNFAC FGDVMSFDAT 300 YNTNRYKLVF VPFTGVDNHK RSITFGAGLI AREDVESYEW LLKNFKNAMG YTPRCVITDQ 360 DPALKIAIPN IMPETRHRFC MWHIMEKVGD KAGNALAKNM EFRKALNNTV WDETLCAAEF 420 ELKWAEVMKK YNLVEHRWFD QMYKARESWI PAYFQDIFMG GLLKTTSRSE SENSYFGKFT 480 NHHNSLVEFL MQYNRAIGEQ RHNQQKLNAE SESSFPETKT PLAIERQAAA MYTKNIFYDF 540 QADIWEGSFK CKITWGGIEN GGRKYIVHEE GGKMFEVTHE AATHKTECKC NKFNRVGIVC 600 KHVLAVFKNE GVEEIPRCYI TPRWTKNACA QPMYNVVWKA CSTTQGGNEL RTIANQLWNE 660 FYNCMGLANG CADEMDIMLS TMQELKGRLQ SARQQTKTSN TPQSVIESIL NTTAPAEIQI 720 KPPSIAKNKG SGKRLKSNKE KAIEKQTKKV RTCATCDRPG HDSRNCPNRK VIPNEQTGMA 780 DTTTNTISF

Sequence ? help Back to Top

Protein Sequence Length: 789 aa Download sequence

MDARPDSIDD SSIRNFNGNC DSMDEAPPGN QRSEAEPTEC NMVVLPNGTK QWLPNYKSES  60
TPYIGQEFAS LEDGINFYQP YASIAGFDIR HGTKRLNREG AVHLKHILCS REGYKPKKIG  120
STVAADKGNS TEPKKRRRLS NRVGCKARIV FTRRKSGNYK IHALELWHKH CLCSDIGKPF  180
LKINRQLDIG HKIFVANCAR ANIGSTKSWR LYKEMVGSFS DIGATSADFC NFRRDLLAYI  240
AGADAQMIVD DMFKNKEMEP DFYFDFDLNE ERELCRLFWA DTISRKNFAC FGDVMSFDAT  300
YNTNRYKLVF VPFTGVDNHK RSITFGAGLI AREDVESYEW LLKNFKNAMG YTPRCVITDQ  360
DPALKIAIPN IMPETRHRFC MWHIMEKVGD KAGNALAKNM EFRKALNNTV WDETLCAAEF  420
ELKWAEVMKK YNLVEHRWFD QMYKARESWI PAYFQDIFMG GLLKTTSRSE SENSYFGKFT  480
NHHNSLVEFL MQYNRAIGEQ RHNQQKLNAE SESSFPETKT PLAIERQAAA MYTKNIFYDF  540
QADIWEGSFK CKITWGGIEN GGRKYIVHEE GGKMFEVTHE AATHKTECKC NKFNRVGIVC  600
KHVLAVFKNE GVEEIPRCYI TPRWTKNACA QPMYNVVWKA CSTTQGGNEL RTIANQLWNE  660
FYNCMGLANG CADEMDIMLS TMQELKGRLQ SARQQTKTSN TPQSVIESIL NTTAPAEIQI  720
KPPSIAKNKG SGKRLKSNKE KAIEKQTKKV RTCATCDRPG HDSRNCPNRK VIPNEQTGMA  780
DTTTNTISF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	139	PKKRRRL
2	135	139	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-89	FAR1 family protein