PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019173276.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GRF

Protein Properties

Length: 548aa MW: 58579.1 Da PI: 8.4911

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019173276.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.2	8e-25	199	243	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e XP_019173276.1 199 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVEG 243 79****************************************985 PP
2	QLQ	61.4	2.5e-21	130	164	1	35
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 ++FT++Q+++L++Q+l+yK+++an+P+P++Ll ++ XP_019173276.1 130 GPFTPSQWMELEHQALIYKHMVANVPIPSNLLIPL 164 59******************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence
MDFGLMAAAG TAGTTRQHPD EPPGGGDTHG SGHPKQERSA AAPSKVPSFL WRSADSVPGK 60 ATMLSFSSSK SEEIPFLSSA PAGEDSSKTI CFPLFESHQK RGPHSGAASS AYAIGGLNES 120 LRGGSARISG PFTPSQWMEL EHQALIYKHM VANVPIPSNL LIPLMKSLNP YAFSGLSPGS 180 YAPNWGWGAF HLGLSANTDP EPGRCRRTDG KKWRCSRDAV PDQKYCERHI NRGRHRSRKP 240 VEGQTGHAVS GSTTSKVSPI ASSSASAASV ISCDATSNTF GAMKHHFNNT KPSPANPSTH 300 HLMNNRTQGH NPYKESSQEL GFGFPSSDSV LNPLQRRPFV NSHNSDTLLD FNAHEQHLVH 360 HFIDGWTKEQ STCAPASWPT ELKSDWTQLS MSIPMASSDF SSSSTSPRQE KPTISPLRLS 420 RELEPFQMGL GVSNNGIADP IQKPSTWIPV TWGNSMGGPL GEALNNTYGS AGAGKTSPNL 480 NLTTEMWSSS PYMGSSPTGV LQKSSFVSLS NSSTASSPQD DNKKVESARM CNDMVGSSVV 540 SSLSIPSL

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence

MDFGLMAAAG TAGTTRQHPD EPPGGGDTHG SGHPKQERSA AAPSKVPSFL WRSADSVPGK  60
ATMLSFSSSK SEEIPFLSSA PAGEDSSKTI CFPLFESHQK RGPHSGAASS AYAIGGLNES  120
LRGGSARISG PFTPSQWMEL EHQALIYKHM VANVPIPSNL LIPLMKSLNP YAFSGLSPGS  180
YAPNWGWGAF HLGLSANTDP EPGRCRRTDG KKWRCSRDAV PDQKYCERHI NRGRHRSRKP  240
VEGQTGHAVS GSTTSKVSPI ASSSASAASV ISCDATSNTF GAMKHHFNNT KPSPANPSTH  300
HLMNNRTQGH NPYKESSQEL GFGFPSSDSV LNPLQRRPFV NSHNSDTLLD FNAHEQHLVH  360
HFIDGWTKEQ STCAPASWPT ELKSDWTQLS MSIPMASSDF SSSSTSPRQE KPTISPLRLS  420
RELEPFQMGL GVSNNGIADP IQKPSTWIPV TWGNSMGGPL GEALNNTYGS AGAGKTSPNL  480
NLTTEMWSSS PYMGSSPTGV LQKSSFVSLS NSSTASSPQD DNKKVESARM CNDMVGSSVV  540
SSLSIPSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	1e-86	GRF family protein