PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019173045.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 325aa MW: 36703 Da PI: 5.6323

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019173045.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41	3.4e-13	149	195	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++N +f L +lP + kK +Ka++Le+A++Y+k+Lq XP_019173045.1 149 DHILAERKRREKLNRKFIALSAILPGL-----KKSDKASVLEEAIRYLKELQ 195 6899*********************.....8****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence
MASSFEDSSV LQGWFLDLEE DDECYNLGSH LQENSSFDDF AAHNSFITQE ENNNIVQRSE 60 SPESYTSGYS IFMPNANNGN ITRTATISFA GGFQFQADQF EERPPPPLKQ IKGDDYTNKK 120 LPTSSSSTLH HNLVSGVNKG RERTHLSQDH ILAERKRREK LNRKFIALSA ILPGLKKSDK 180 ASVLEEAIRY LKELQENVKH LEQARNTRLE KTVLKRRKVI SPGDDLSEQG HDCSDVDDDK 240 TAPEIEVRFS EKSALIRVHS PERIPSLSTF LREIESLQLT ILNSSAMPFG KNATDITLVA 300 QMEEGFCMTT NDVVKHLQRS MNPTI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	154	159	ERKRRE
2	155	160	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	2e-41	bHLH family protein