PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019172965.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 221aa    MW: 25344.7 Da    PI: 8.4724
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019172965.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF885.1e-281059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n++nrqvtfskRrng+lKKA+EL +LCdaev ++ifsstgkl+e++s
  XP_019172965.1 10 RIDNSTNRQVTFSKRRNGLLKKAKELGILCDAEVGLMIFSSTGKLHEFAS 59
                    8***********************************************86 PP
2K-box77.43.7e-2678170598
           K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     ++ ++ +++ + +q+e+a L+++++n+q+ +R+l+Ge L  Ls+keLq+Le+qLe sl+ iR kK+++l++qi+el +k   +++en +L kk+
  XP_019172965.1  78 QSPQNPASELKFWQTEAAILRQQLHNMQEDHRKLMGE-LYGLSVKELQNLENQLEMSLRGIRMKKEQILIDQIQELTNKGSFVHQENLELFKKV 170
                     4444788999**************************8.9*************************************************999886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
MGRGKVVIRR IDNSTNRQVT FSKRRNGLLK KAKELGILCD AEVGLMIFSS TGKLHEFAST  60
SMRSVIERYN KTQDESLQSP QNPASELKFW QTEAAILRQQ LHNMQEDHRK LMGELYGLSV  120
KELQNLENQL EMSLRGIRMK KEQILIDQIQ ELTNKGSFVH QENLELFKKV YGTRDPNTVN  180
GDTISPYDFT ISEESHAHIH LQLSQPQPQN FSDRATALDS T
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.11e-89MIKC_MADS family protein