PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019172962.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MIKC_MADS

Protein Properties

Length: 223aa MW: 25620 Da PI: 8.4724

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019172962.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88	5.2e-28	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++nrqvtfskRrng+lKKA+EL +LCdaev ++ifsstgkl+e++s XP_019172962.1 10 RIDNSTNRQVTFSKRRNGLLKKAKELGILCDAEVGLMIFSSTGKLHEFAS 59 8***********************************************86 PP
2	K-box	78.1	2.3e-26	78	171	5	99
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++ ++ +++ + +q+e+a L+++++n+q+ +R+l+Ge L Ls+keLq+Le+qLe sl+ iR kK+++l++qi+el +k +++en +L kk++ XP_019172962.1 78 QSPQNPASELKFWQTEAAILRQQLHNMQEDHRKLMGE-LYGLSVKELQNLENQLEMSLRGIRMKKEQILIDQIQELTNKGSFVHQENLELFKKFQ 171 4444788999************************8.9*************************************************99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence
MGRGKVVIRR IDNSTNRQVT FSKRRNGLLK KAKELGILCD AEVGLMIFSS TGKLHEFAST 60 SMRSVIERYN KTQDESLQSP QNPASELKFW QTEAAILRQQ LHNMQEDHRK LMGELYGLSV 120 KELQNLENQL EMSLRGIRMK KEQILIDQIQ ELTNKGSFVH QENLELFKKF QVYGTRDPNT 180 VNGDTISPYD FTISEESHAH IHLQLSQPQP QNFSDRATAL DST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.1	2e-89	MIKC_MADS family protein