PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019172957.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 25835.2 Da    PI: 8.4724
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019172957.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF885.2e-281059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n++nrqvtfskRrng+lKKA+EL +LCdaev ++ifsstgkl+e++s
  XP_019172957.1 10 RIDNSTNRQVTFSKRRNGLLKKAKELGILCDAEVGLMIFSSTGKLHEFAS 59
                    8***********************************************86 PP
2K-box73.65.7e-2579173599
           K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke.lqeenkaLrkkl 98 
                     ++ ++ +++ + +q+e+a L+++++n+q+ +R+l+Ge L  Ls+keLq+Le+qLe sl+ iR kK+++l++qi+el +k+ + +++en +L kk+
  XP_019172957.1  79 QSPQNPASELKFWQTEAAILRQQLHNMQEDHRKLMGE-LYGLSVKELQNLENQLEMSLRGIRMKKEQILIDQIQELTNKQGSfVHQENLELFKKF 172
                     4444788999**************************8.9************************************99888662688998998887 PP

           K-box  99 e 99 
                     +
  XP_019172957.1 173 Q 173
                     5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MGRGKVVIRR IDNSTNRQVT FSKRRNGLLK KAKELGILCD AEVGLMIFSS TGKLHEFAST  60
SSMRSVIERY NKTQDESLQS PQNPASELKF WQTEAAILRQ QLHNMQEDHR KLMGELYGLS  120
VKELQNLENQ LEMSLRGIRM KKEQILIDQI QELTNKQGSF VHQENLELFK KFQVYGTRDP  180
NTVNGDTISP YDFTISEESH AHIHLQLSQP QPQNFSDRAT ALDST
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.11e-87MIKC_MADS family protein