PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019172946.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 330aa    MW: 36215.8 Da    PI: 5.2938
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019172946.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87e-12160203654
                     HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  XP_019172946.1 160 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 203
                     589*********************66......****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    
MELSPPGLYS LEELVGAPRR ENWSTTTLFT SPDTFFSNAW SNGFDESLDP PDFVSSSSSS  60
LLDLLTLPQE PTTFACPDLQ IQHGCGFANA APPPQEEYGG GGGGGGVFGG INNLQESDEF  120
SGLMRSCGCA QVKMEQLGNN GGGGKKSKSK KVEGQPSKNL MAERRRRKRL NDRLSMLRSI  180
VPKISKMDRT SILGDTIDYM KELLEKIHQL REDTLEEDDK NHIKSLAPNT SRELKSNEAI  240
VRNPPKFDVE RRNVDTRIEI CCATKPGLLL STVSTIEALG LDIHQCVISC FNDFSFQATC  300
AEATDHRTVL SQEDVKQALF KTAGYGGRCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163170ERRRRKRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.14e-76bHLH family protein