PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019172932.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 377aa    MW: 41220 Da    PI: 6.9032
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019172932.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.65.2e-09200247455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  XP_019172932.1 200 SHSLAERARREKISKKMKCLQDLVPGC----NKVVGKAGMLDEIINYVQSLQ 247
                     8*************************9....677*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    
MLRCAQSSPE NNNVSYSAAD LSVLERQRAI FQRLYQPIIH DNHLAGAGAP APENPFPALL  60
DGNLTNLASL WHAEENSPNA VVDVHGRETG KLSRSSSSIT AAAVPTSSKA NDQNATPGGG  120
RANGTATSTR KRKAEHCLED KKWEGETTDV QSEITVKCER ETSGSSASKE NKKSSGGSGE  180
DVQKSDYIHV RARRGQATDS HSLAERARRE KISKKMKCLQ DLVPGCNKVV GKAGMLDEII  240
NYVQSLQKQV EFLSMKLAAL NPRLEFNMDN LFPKELPAYM GSFPAAAAAM PLEAVNAAFL  300
HYNPLQQFAT ATSRGGAASM ETDMVRSDVQ IMLPHHQRKE NNPSESIPEA YLDSSYFPQL  360
QGWESECWQT PFNGSFH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36540.11e-51bHLH family protein