PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019172853.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 476aa MW: 54102 Da PI: 7.9426

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019172853.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52	2.4e-16	120	218	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 +fY +YA+ GF+vr s+ k r+g + r +vC ++g r + + +err+r ++r++C+a++ +k+++ k+ v+ +e++H+ XP_019172853.1 120 QFYINYARISGFDVRHSSVKLD-RDGVSYLRYLVCCRQGVRGGGHIPrryepsstrDPRERRRRISNRVKCRARIGFRKRSNRKFFVSIFEEKHT 213 6************9987776.9999999*****99876655677889888889999***************************** PP FAR1 87 Helap 91 H+l++ XP_019172853.1 214 HQLCS 218 *85 PP

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence
MGERPSTRGA GSTSCDHRPW LSNSEHMYPP LLVVPRTCAD GEPTDVHPET ENNNAGGETG 60 TNNPPLRAPA DDDHSQSAEM TLETEAAACG TIGLAPTVPG DATLLPAVGQ EFNTLVEGIQ 120 FYINYARISG FDVRHSSVKL DRDGVSYLRY LVCCRQGVRG GGHIPRRYEP SSTRDPRERR 180 RRISNRVKCR ARIGFRKRSN RKFFVSIFEE KHTHQLCSES SKVFLRINRR LDVAQQAFLA 240 NCVKSNIGAS TGLRFCKEAR GSYANIGATD VEFHNFKRDL QKYVEAGDGE MIIATFKAKQ 300 EVCSDFFFDH HLDEEDRLAR LFWADPKGRR TFRCYDDNVS FDATYGTNRY SMVFVPFTGV 360 DNHKRCITFG AGLLTKEDAD SYTWLLDKFK SSMGKNPLCV ATDQDLVMRI AMDRVFPETR 420 HRYCMWHIMT KVNEKLGGSA LGKDETFRKK LNDIVWNERI HPDVFDVECH QLMTEY

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence

MGERPSTRGA GSTSCDHRPW LSNSEHMYPP LLVVPRTCAD GEPTDVHPET ENNNAGGETG  60
TNNPPLRAPA DDDHSQSAEM TLETEAAACG TIGLAPTVPG DATLLPAVGQ EFNTLVEGIQ  120
FYINYARISG FDVRHSSVKL DRDGVSYLRY LVCCRQGVRG GGHIPRRYEP SSTRDPRERR  180
RRISNRVKCR ARIGFRKRSN RKFFVSIFEE KHTHQLCSES SKVFLRINRR LDVAQQAFLA  240
NCVKSNIGAS TGLRFCKEAR GSYANIGATD VEFHNFKRDL QKYVEAGDGE MIIATFKAKQ  300
EVCSDFFFDH HLDEEDRLAR LFWADPKGRR TFRCYDDNVS FDATYGTNRY SMVFVPFTGV  360
DNHKRCITFG AGLLTKEDAD SYTWLLDKFK SSMGKNPLCV ATDQDLVMRI AMDRVFPETR  420
HRYCMWHIMT KVNEKLGGSA LGKDETFRKK LNDIVWNERI HPDVFDVECH QLMTEY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-40	FAR1 family protein