PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019172839.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 472aa MW: 53732.7 Da PI: 8.3664

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019172839.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.8	1.2e-20	65	165	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 +fYn++A +vGF++r s+ ++ r+g+ ++++ vC++eg++++ ++ ++ +r+r+++rtgCka++ k + ++v+++ + XP_019172839.1 65 EFYNNFAAKVGFDTRSSSLTTA-RDGTKIQKQIVCNREGFKNTGAQHchskptadagegPSRPKRRRVSNRTGCKARIIFKYIGAAGYQVKTFIE 158 6*************998887.88889***********999999****99899999************************** PP FAR1 84 eHnHela 90 +HnH+++ XP_019172839.1 159 KHNHSMS 165 **986 PP

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence
MEEFDQVPND LQSLNNPSLS PSSSSSNGYT LTISPGMTQY WTPHCEDEIK PAVDMIFKTL 60 DAGIEFYNNF AAKVGFDTRS SSLTTARDGT KIQKQIVCNR EGFKNTGAQH CHSKPTADAG 120 EGPSRPKRRR VSNRTGCKAR IIFKYIGAAG YQVKTFIEKH NHSMSSVLAR QFLKGNRNIS 180 SVHQKFILDC AKANIGASKS HGLYSQIVGD YSEVGATVVD FKMSEGISEH TYWMSRLFWT 240 DPMSKKNFAA FGDVVSFDAT YSTNRYDLAM GMEPRIIVTD QDPAMKVAIP RVFKQARHRY 300 CMWHIMCKVG EKVGHTLNKN EEFKNKLNSI VWTSSLEPPD FEKQWRELME KYNLVEHNWF 360 TTMFEARNHW IPAYFRDDFM GGLLRTTSRS ESENYTYSHF TGPQSSLVEF MMNFDSALKS 420 QRNTNAKLNS DNEGYNPDMK TPLGIEKHAS IVYTITVFYQ VQEEIPVSNV LC

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence

MEEFDQVPND LQSLNNPSLS PSSSSSNGYT LTISPGMTQY WTPHCEDEIK PAVDMIFKTL  60
DAGIEFYNNF AAKVGFDTRS SSLTTARDGT KIQKQIVCNR EGFKNTGAQH CHSKPTADAG  120
EGPSRPKRRR VSNRTGCKAR IIFKYIGAAG YQVKTFIEKH NHSMSSVLAR QFLKGNRNIS  180
SVHQKFILDC AKANIGASKS HGLYSQIVGD YSEVGATVVD FKMSEGISEH TYWMSRLFWT  240
DPMSKKNFAA FGDVVSFDAT YSTNRYDLAM GMEPRIIVTD QDPAMKVAIP RVFKQARHRY  300
CMWHIMCKVG EKVGHTLNKN EEFKNKLNSI VWTSSLEPPD FEKQWRELME KYNLVEHNWF  360
TTMFEARNHW IPAYFRDDFM GGLLRTTSRS ESENYTYSHF TGPQSSLVEF MMNFDSALKS  420
QRNTNAKLNS DNEGYNPDMK TPLGIEKHAS IVYTITVFYQ VQEEIPVSNV LC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	127	131	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-56	FAR1 family protein