PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019172830.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 724aa MW: 82588.2 Da PI: 8.7373

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019172830.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.4	1.5e-20	90	190	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 +fYn+YA +vGF++r s+ + r+g+ t+++ vC++eg++++ ++ ++ +r+r+++rtgC+a++ k + ++vt++ + XP_019172830.1 90 EFYNHYAAKVGFDTRSSSDVTA-RDGTKTQKQIVCNREGFKNTGAQHchsqssadagegPSRPKRRRVSNRTGCRARIIFKYIGAAGYQVTTFIE 183 6************9988776.8888************999999***999899999************************** PP FAR1 84 eHnHela 90 +HnH+++ XP_019172830.1 184 KHNHSMS 190 **986 PP

Sequence ? help Back to Top
Protein Sequence Length: 724 aa Download sequence
MVKVWWSHHG VEEATWELEA SMRERYPELF VEVPIDIQST NNPSLSPSSS SNGHTLTISP 60 GMTQYWTPHY EDEIKLAVDM IFKTLDAGIE FYNHYAAKVG FDTRSSSDVT ARDGTKTQKQ 120 IVCNREGFKN TGAQHCHSQS SADAGEGPSR PKRRRVSNRT GCRARIIFKY IGAAGYQVTT 180 FIEKHNHSMS SVLERQFLKG NRNISSVHQK FILDCAKANI GASKSHGLYS HIVGDYSEVG 240 VTVVDFKNVR RDLRAYILGA DAQIVVHNII KKQEMCPAFA FDYEVNEDEQ MSRLFWADPM 300 SKKNFAAFGD VVSFDATYST NRYDLAMGME PRIIVTDHDP AMNVAIPTVF KQARHRYCMW 360 HIMCKVGEKV GPTLNKDEEF RNKLNSIVWT SSLEPPYFEK QWRELMEKTT SRSESENYTY 420 SRFTGPQSSL VEFMMNFDSA LKSQRNTNAK LNSDNEGYNP DMKTPLRIEK HASIVYTIIV 480 FYQVPEEICA SCFKCMVLSV REDGGMLHYD IMDGKNKRFT VVHNVNDHEA KCSCKMFEMV 540 GLLCRHIFVV FRDLERIPLK YVVNLWTKDA SLKATFEIDG VIYDQNGPKD EKKMLLNKVW 600 SDIHCCMDLA GSNMEQLTAF SQVINEQKQL LLSGKEKLSP QHSRRTVIES YCGSTEISEI 660 NILPPKQARN KGSGKRIKSS KELAMEKQKG RKCKFCGVRG DHLDTRTCPL NPKNKDKQKG 720 KKKA

Sequence ? help Back to Top

Protein Sequence Length: 724 aa Download sequence

MVKVWWSHHG VEEATWELEA SMRERYPELF VEVPIDIQST NNPSLSPSSS SNGHTLTISP  60
GMTQYWTPHY EDEIKLAVDM IFKTLDAGIE FYNHYAAKVG FDTRSSSDVT ARDGTKTQKQ  120
IVCNREGFKN TGAQHCHSQS SADAGEGPSR PKRRRVSNRT GCRARIIFKY IGAAGYQVTT  180
FIEKHNHSMS SVLERQFLKG NRNISSVHQK FILDCAKANI GASKSHGLYS HIVGDYSEVG  240
VTVVDFKNVR RDLRAYILGA DAQIVVHNII KKQEMCPAFA FDYEVNEDEQ MSRLFWADPM  300
SKKNFAAFGD VVSFDATYST NRYDLAMGME PRIIVTDHDP AMNVAIPTVF KQARHRYCMW  360
HIMCKVGEKV GPTLNKDEEF RNKLNSIVWT SSLEPPYFEK QWRELMEKTT SRSESENYTY  420
SRFTGPQSSL VEFMMNFDSA LKSQRNTNAK LNSDNEGYNP DMKTPLRIEK HASIVYTIIV  480
FYQVPEEICA SCFKCMVLSV REDGGMLHYD IMDGKNKRFT VVHNVNDHEA KCSCKMFEMV  540
GLLCRHIFVV FRDLERIPLK YVVNLWTKDA SLKATFEIDG VIYDQNGPKD EKKMLLNKVW  600
SDIHCCMDLA GSNMEQLTAF SQVINEQKQL LLSGKEKLSP QHSRRTVIES YCGSTEISEI  660
NILPPKQARN KGSGKRIKSS KELAMEKQKG RKCKFCGVRG DHLDTRTCPL NPKNKDKQKG  720
KKKA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	152	156	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-64	FAR1 family protein