PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019172144.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WOX
Protein Properties Length: 315aa    MW: 35211.2 Da    PI: 6.7191
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019172144.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.23.7e-2044105257
                     T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     ++R+t+t+eq+++L+el+++   r p+a++++++++kl    +++ ++V++WFqN++a+e++
  XP_019172144.1  44 STRWTPTTEQIRILKELYYNngVRSPTADQIQRISAKLrqygKIEGKNVFYWFQNHKARERQ 105
                     58****************98678*************************************97 PP
2Wus_type_Homeobox115.42.7e-3743107265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++tRWtPt+eQi+iL+ely+ +G+r+P++++iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
     XP_019172144.1  43 SSTRWTPTTEQIRILKELYYnNGVRSPTADQIQRISAKLRQYGKIEGKNVFYWFQNHKARERQKK 107
                        789***************9779*****************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    
MEPQQQQYYH QTQAQQGGGN EEGGGSGSKN SNVNGGGYLC RQSSTRWTPT TEQIRILKEL  60
YYNNGVRSPT ADQIQRISAK LRQYGKIEGK NVFYWFQNHK ARERQKKRLT VSATAPDAAA  120
AAATFSMQMQ RGVWRSDQCS TFNPASSSPG MVAVGQIGNY GGYGNTVAME RSFRDCSISA  180
GSNGNGCVMA ASPNYGWVGV DNHHHHPYSS STPYYPFLEK IKSTYDDHET LEEDQQDEDD  240
QKEPETLPLF PVHTDHHHHH HNYSGKPPQE SFNGGGYYTN TDQWYHYDDN GSASRASLEL  300
SLNSYNMATS SLHFP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.12e-41WOX family protein