PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019172066.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 722aa    MW: 80536.5 Da    PI: 6.4296
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019172066.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.81.1e-192580156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +++ +++t++q+++Le +F+ +++p++++r++L+++lgL+ +q+k+WFqN+R++ k
  XP_019172066.1 25 KKHYHRHTSQQIQQLEGFFKDCPHPDENQRRQLSRELGLEPKQIKFWFQNKRTQTK 80
                    688999**********************************************9987 PP
2START125.75.9e-402374563206
                     HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     + +a++e++ + +a+ep+W + +  e+g  vl +++ ++v            ++e +++sgvv +++a+l    ld + +W   ++     a ++
  XP_019172066.1 237 MAAAMEEVIELLQADEPLWIRTP--EEGRLVLHRETYDRVfpkvnylrsvsTRTESSKDSGVVAANPAELIDMCLDPS-KWMDSFPtivaTARVI 328
                     6799*******************..777777777777777777778888999****************8888888888.99999999998***** PP

                     EEECTT...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS
           START  83 evissg...galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdl 172
                     ev++sg   g lqlm+ ++  lsp+v+ Rdf f+Ry+rql    w+ v vS d  ++++   +s+    +lpSg+li+++ ng+skvtw+ehv +
  XP_019172066.1 329 EVLDSGmlgGSLQLMYEKMHILSPMVApRDFIFLRYCRQLDSSAWLMVHVSYDCFKENEGfAPSYSW--RLPSGCLIQDLHNGKSKVTWIEHVQV 421
                     **************************99******************************999888876..9************************* PP

                     -SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 173 kgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                     +++   h l+r l+  ++a ga++w  tlqr ce+
  XP_019172066.1 422 DDKAQtHRLYRDLICGSQAYGANRWIVTLQRMCER 456
                     *99887***************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    
MDSGYRGNGS GDDNDQDSSS SRRGKKHYHR HTSQQIQQLE GFFKDCPHPD ENQRRQLSRE  60
LGLEPKQIKF WFQNKRTQTK AQGERADNSA LRTENERIHC ENLAMREALK NVVCLNCDGP  120
GLGEEERKRG LQILRMENAQ LKEEHERLSA MISNLMGRSM VVAPPCSGVL HEESNYLLAG  180
GLLGGDGSSP PVDQMENVHR NIIPRNNNNN PAVVSSQPLT LGGGVQEMEK SVMIETMAAA  240
MEEVIELLQA DEPLWIRTPE EGRLVLHRET YDRVFPKVNY LRSVSTRTES SKDSGVVAAN  300
PAELIDMCLD PSKWMDSFPT IVATARVIEV LDSGMLGGSL QLMYEKMHIL SPMVAPRDFI  360
FLRYCRQLDS SAWLMVHVSY DCFKENEGFA PSYSWRLPSG CLIQDLHNGK SKVTWIEHVQ  420
VDDKAQTHRL YRDLICGSQA YGANRWIVTL QRMCERYAFS MGLRGAPTAK HELEGVINEP  480
QGRRSVMQLS QRMVKSFCEV LNMGERVDFP QSSEMNNSGV RISIRKSAGE TAQSADALIV  540
CAASSLWLPL PLDHLFNFFR DDQLRAHWDV LSNGYPVTEV ARIPTGNHPG NCVSIIQPYV  600
SKESSMLMLQ ENCVNSLEGH VVYAPMDLPV ITATMNGDDP IKFPMLPSGF VISGDGRLEK  660
RSSTSSSKKG QGGSLLTVAF QILISNGSLS KQVNMDCVAT VHALISSTVQ KIKTALDCSD  720
LE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0HD-ZIP family protein