PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019171996.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 588aa MW: 66952.4 Da PI: 8.7172

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019171996.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	58.1	3e-18	11	111	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 +fYn+YA +vGF++r s+ ++ r+g ++++ C+keg++++ ++ ++ +r+r+++ tgC+ ++ k + ++v+++ + XP_019171996.1 11 QFYNNYAAKVGFDTRSSSLTTA-RDGMKIQKQIICNKEGFKNTGAQHchskptadagegPSRPKRRRVSNITGCRTRIIFKYIGAAGYQVKTFIE 104 6*************998887.88889***********999999****998899999************************* PP FAR1 84 eHnHela 90 +HnH+++ XP_019171996.1 105 KHNHSMS 111 **986 PP

Sequence ? help Back to Top
Protein Sequence Length: 588 aa Download sequence
MIFKTLDAGI QFYNNYAAKV GFDTRSSSLT TARDGMKIQK QIICNKEGFK NTGAQHCHSK 60 PTADAGEGPS RPKRRRVSNI TGCRTRIIFK YIGAAGYQVK TFIEKHNHSM SSVLARQFLK 120 GNRNISSVHQ KFILDCAKAN IGASKSHGLY SQIVGDYSEV GATVVDFKNV RRDLRAYILG 180 VDAQILVHNL IKKKQEMCPA FAFDYEVDED EQMSRLFWAD PMSKKNFAAF GDVISFDATY 240 STNRYDLVDN HKKCNGYGTK NNCHRSRSSY ESGDSKSFQA SQASLLHGYC MWHIMCKVGE 300 KVGPTLNKND EFKNKLNSIV WKSSLEPPDF EKQWREPMEK YNLVEHNWFR TMGGLLRTTS 360 RSESENYTYS RFTGPQSSLV EFMMNFDSAL KSQCNTNAKL NSDNEGYNPD MKTPMGIEKH 420 ASIVYTITVF YQVQEEICAS CFKCMVLSVR EDGGMLHYYI MDGKNKIFSV VHNVNDHEAK 480 CSCKMFEMVG LLCRHIFVVF RDLEKIPLRY VVNRWTKDAS LKATFEIDGV IYDQNGPNDE 540 KKMMLNKLWA DVHCCIDLAG SNMEQLAAFS QVINEPKQVL MSGKEKLV

Sequence ? help Back to Top

Protein Sequence Length: 588 aa Download sequence

MIFKTLDAGI QFYNNYAAKV GFDTRSSSLT TARDGMKIQK QIICNKEGFK NTGAQHCHSK  60
PTADAGEGPS RPKRRRVSNI TGCRTRIIFK YIGAAGYQVK TFIEKHNHSM SSVLARQFLK  120
GNRNISSVHQ KFILDCAKAN IGASKSHGLY SQIVGDYSEV GATVVDFKNV RRDLRAYILG  180
VDAQILVHNL IKKKQEMCPA FAFDYEVDED EQMSRLFWAD PMSKKNFAAF GDVISFDATY  240
STNRYDLVDN HKKCNGYGTK NNCHRSRSSY ESGDSKSFQA SQASLLHGYC MWHIMCKVGE  300
KVGPTLNKND EFKNKLNSIV WKSSLEPPDF EKQWREPMEK YNLVEHNWFR TMGGLLRTTS  360
RSESENYTYS RFTGPQSSLV EFMMNFDSAL KSQCNTNAKL NSDNEGYNPD MKTPMGIEKH  420
ASIVYTITVF YQVQEEICAS CFKCMVLSVR EDGGMLHYYI MDGKNKIFSV VHNVNDHEAK  480
CSCKMFEMVG LLCRHIFVVF RDLEKIPLRY VVNRWTKDAS LKATFEIDGV IYDQNGPNDE  540
KKMMLNKLWA DVHCCIDLAG SNMEQLAAFS QVINEPKQVL MSGKEKLV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	73	77	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-64	FAR1 family protein