PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019171977.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 354aa MW: 40390.9 Da PI: 8.6128

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019171977.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.4	1.2e-18	30	129	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtklele 84 f +YA +vGF++r s+ + r+g+ t+++ vC++eg++++ ++ ++ +r+r+++rtgC+a+++ k + ++vt++ ++ XP_019171977.1 30 FCTHYAAKVGFDTRSSSVITA-RDGTKTQKQIVCNREGFKNTGAQHchsqssadagegPSRPKRRRVSNRTGCRARIMFKYIGAAGYQVTTFIEK 123 7789********9998887.8888************999999***999899999*************************** PP FAR1 85 HnHela 90 HnH+++ XP_019171977.1 124 HNHNMS 129 *986 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MTQYWTPHCE DEIRPAVDMI FKTLDAGIEF CTHYAAKVGF DTRSSSVITA RDGTKTQKQI 60 VCNREGFKNT GAQHCHSQSS ADAGEGPSRP KRRRVSNRTG CRARIMFKYI GAAGYQVTTF 120 IEKHNHNMSS VLARQFLKGN RNISSVHQKF ILDCAKTNIG ASKSHGLNSH IVGDYSEVGA 180 TVVDFKNVRR DLRAYILGAD AQILVHNLIK KQEMCPAFAF DYEVDEDEQM SRLFWADPMS 240 KKNFAAFGDV VSFDATYSTN RYDLAMGMEP RIIVTDQDPA MKVAIPTFFK QARHRYCMWH 300 IMCKVGEKVG PTLNKDEEFR NKLNSIVWTS SLEPPDFEKQ WRELMEKYNL VEHN

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MTQYWTPHCE DEIRPAVDMI FKTLDAGIEF CTHYAAKVGF DTRSSSVITA RDGTKTQKQI  60
VCNREGFKNT GAQHCHSQSS ADAGEGPSRP KRRRVSNRTG CRARIMFKYI GAAGYQVTTF  120
IEKHNHNMSS VLARQFLKGN RNISSVHQKF ILDCAKTNIG ASKSHGLNSH IVGDYSEVGA  180
TVVDFKNVRR DLRAYILGAD AQILVHNLIK KQEMCPAFAF DYEVDEDEQM SRLFWADPMS  240
KKNFAAFGDV VSFDATYSTN RYDLAMGMEP RIIVTDQDPA MKVAIPTFFK QARHRYCMWH  300
IMCKVGEKVG PTLNKDEEFR NKLNSIVWTS SLEPPDFEKQ WRELMEKYNL VEHN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	95	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-43	FAR1 family protein