PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019171965.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 358aa    MW: 40879.3 Da    PI: 7.1294
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019171965.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.38e-2149135191
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     ++Yn+YA +vGFsvr+ k+++s+ +++++++ f Csk g+++++ k       ++   rtgC a ++  ++++g w v+k e+ HnHel+p
  XP_019171965.1  49 DMYNDYAFRVGFSVRRGKQRYSSATKTMKTKMFHCSKDGFKRSTGKG----CYSKIDGRTGCGAFVQFDLHENGMWIVSKHEKLHNHELVP 135
                     58****************************************99887....88999*********************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    
MSDSIAQQDV AETEHTTDPV GVVDTEDANP DMDYDLVGMS VCSVDEAYDM YNDYAFRVGF  60
SVRRGKQRYS SATKTMKTKM FHCSKDGFKR STGKGCYSKI DGRTGCGAFV QFDLHENGMW  120
IVSKHEKLHN HELVPPSKSY LLRSHRMVSR NHISYLTDLK SSGVSVADGV RLLKTQSGGS  180
PLVGFTSGDA YNSLCTDALN KLDSTDSNTL IEIFKRRQSS ERDFYFDFEV DLESRLCSFF  240
WRDGWMRRYY DLFGDLLVHD TTYRTNKYDM ICGPFVGMNN HCMNVMFGCG FLMNEKIELF  300
VWLFKTFLRS MDYKSPQSIM TDQCAAMAAA IVQVFPSSRH RLCIWHIDEN SKKHIKGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-56FAR1 family protein