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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | XP_019171911.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 225aa MW: 25977.6 Da PI: 4.7524 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 38.7 | 1.7e-12 | 3 | 53 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rr+R++++ +q+++Le+ Fe ++++ e++ +LA+ rqV vWFqNrRa++k
XP_019171911.1 3 RRRRRRLSVDQVKALEKNFEVENKLEPERKVKLAQ-----XRQVAVWFQNRRARWK 53
89********************************8.....6**************9 PP
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| 2 | HD-ZIP_I/II | 101.3 | 8.3e-33 | 4 | 90 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
+++rrls +qvk+LE++Fe e+kLeperKv+la+ rqvavWFqnrRAR+ktkqlE+dy +Lk++y++l+ ++e+L k+ +L+++l+
XP_019171911.1 4 RRRRRLSVDQVKALEKNFEVENKLEPERKVKLAQ-----XRQVAVWFQNRRARWKTKQLERDYGVLKANYETLQLDKESLLKQICDLKAKLN 90
589******************************5.....7***********************************************99985 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 225 aa Download sequence |
MARRRRRRLS VDQVKALEKN FEVENKLEPE RKVKLAQXRQ VAVWFQNRRA RWKTKQLERD 60 YGVLKANYET LQLDKESLLK QICDLKAKLN GEMKEEGMES EGKDAKPNSD EIELNXANFK 120 DGSSDSDSSV ILNEETSSYH SSEAFLISHE PFPDCFKLSE HFMLATAVFA DAAVHKLAYP 180 PLQLVKIEEQ LSSEESCSTL FSDEQAPTLP EPDPESWNNW KEDEQ |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 3 | 8 | RRRRRR |
| 2 | 4 | 34 | RRRRRLSVDQVKALEKNFEVENKLEPERKVK |
| 3 | 5 | 35 | RRRRRLSVDQVKALEKNFEVENKLEPERKVK |
| 4 | 48 | 56 | RRARWKTKQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT4G40060.1 | 1e-39 | HD-ZIP family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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