PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019171781.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TCP

Protein Properties

Length: 509aa MW: 53152.4 Da PI: 7.5027

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019171781.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	132.1	5e-41	122	231	3	118
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaak 96 +k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ + s +ss+s+ sa++ XP_019171781.1 122 LAKRSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNISLRSSGSTL-------SAPP 209 579*****************************************************************9997777777777733.......3335 PP TCP 97 skksqksaasalnlakesraka 118 sk++++s +++l+la+ ++ +a XP_019171781.1 210 SKSAPHSFHNTLALAAAHHPQA 231 5556666666666666555444 PP

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence
MEPSNAQSNN KPNSTTASQP FNHQHGGARS VPFMSSISIH AAAAAAAGRP LGGNNTSCNT 60 GSGSGSSSIS PSTSSTSAST SSAAAPAEPP RLVDASLAIA TRSEALLDPS KKPQQAAAQQ 120 QLAKRSTKDR HTKVDGRGRR IRMPAACAAR VFQLTRELGH KSDGETIEWL LQQAEPAIIA 180 ATGTGTIPAN FSTLNISLRS SGSTLSAPPS KSAPHSFHNT LALAAAHHPQ AHPFEEGFSH 240 MLGFHQTPHF LTPNQIADTI SGGGDDGGGG GGRGQDTTEN YLGKRYREDL FKDEGSSNPQ 300 GEPSGAGAGA GASGSDSPSN KQFKGSNMQL PKPIQETTAG PSSTMFRHTN MMPAAAMWAV 360 QSGGTAGAGT FSMLPVSAVP STSGSEPGQM WAFQASSGNT LQAPLHFMSR FNLPGNLDFP 420 GSRATPLQLG SMIMQHHHQQ QQQQQPSQQL GLGMPDGNLG MLAAFNAYPR TGLNMNSDHH 480 QTGRHPLEHH QQHHQTPDDS ADDDPNTSQ

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence

MEPSNAQSNN KPNSTTASQP FNHQHGGARS VPFMSSISIH AAAAAAAGRP LGGNNTSCNT  60
GSGSGSSSIS PSTSSTSAST SSAAAPAEPP RLVDASLAIA TRSEALLDPS KKPQQAAAQQ  120
QLAKRSTKDR HTKVDGRGRR IRMPAACAAR VFQLTRELGH KSDGETIEWL LQQAEPAIIA  180
ATGTGTIPAN FSTLNISLRS SGSTLSAPPS KSAPHSFHNT LALAAAHHPQ AHPFEEGFSH  240
MLGFHQTPHF LTPNQIADTI SGGGDDGGGG GGRGQDTTEN YLGKRYREDL FKDEGSSNPQ  300
GEPSGAGAGA GASGSDSPSN KQFKGSNMQL PKPIQETTAG PSSTMFRHTN MMPAAAMWAV  360
QSGGTAGAGT FSMLPVSAVP STSGSEPGQM WAFQASSGNT LQAPLHFMSR FNLPGNLDFP  420
GSRATPLQLG SMIMQHHHQQ QQQQQPSQQL GLGMPDGNLG MLAAFNAYPR TGLNMNSDHH  480
QTGRHPLEHH QQHHQTPDDS ADDDPNTSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	2e-69	TCP family protein