PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019171213.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 604aa MW: 68594 Da PI: 8.6577

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019171213.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	30.3	1.4e-09	2	57	31	90
FAR1 31 rtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++f+Csk g+++++ k ++ trtgC ++ +dg w vtk e+ HnHel+ XP_019171213.1 2 KKFCCSKAGYKANSGVK----AYSKIDTRTGCGEFVQFDVGDDGLWTVTKHEKVHNHELC 57 79********99877....8999*******************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 604 aa Download sequence
MKKFCCSKAG YKANSGVKAY SKIDTRTGCG EFVQFDVGDD GLWTVTKHEK VHNHELCVFN 60 KSHLLRSHRS VGDNQLLYLQ GLKDSGVALA DGIRFLKHQS GGSPLVGFTS RDAYNSMAAD 120 TVKRLDGTDS NSLIEIFRRR QSTETDFFFD FELDLDARSM GGKSPQTIMT DQCATMAVAI 180 SKVFPTSRHR LYIWHIGENS KKHIKTLRNN KDFLDMFNYV LKYTETEAEF QFYWTRLVTD 240 YKCHKNTWLE KLYDCREKWC PAFNKDYFSG GILSSQRSET TNHSISRRLS KTAGLCDFYS 300 SFVSVISEWR SKENGEDFWR AQGVPAMMME HVKLLSHARE VYTIEIYFLF EEQFMKGSAC 360 HQEMVLNDGR QQKYHVWQPD IDIIRHEVSF NAANLDISCS CKLMSELGIL CCHCIRILHV 420 HCVSSIPDKY ILKRWTKKVI DGRNVNIDSM IYNVGVPPSI WVFDISRKFQ RLVVSSQDSS 480 VARKLCDEAV DDVKKKVEAE VGHVHIEECG VSSSSGGVQN PSSRRLKGER NKRRSGVIEK 540 KYSLARGRRS AANKAALSTK GVVQSLVLEN ISKLAGDGYL VHPSSSSSDF VQFNKGLDDN 600 VGVD

Sequence ? help Back to Top

Protein Sequence Length: 604 aa Download sequence

MKKFCCSKAG YKANSGVKAY SKIDTRTGCG EFVQFDVGDD GLWTVTKHEK VHNHELCVFN  60
KSHLLRSHRS VGDNQLLYLQ GLKDSGVALA DGIRFLKHQS GGSPLVGFTS RDAYNSMAAD  120
TVKRLDGTDS NSLIEIFRRR QSTETDFFFD FELDLDARSM GGKSPQTIMT DQCATMAVAI  180
SKVFPTSRHR LYIWHIGENS KKHIKTLRNN KDFLDMFNYV LKYTETEAEF QFYWTRLVTD  240
YKCHKNTWLE KLYDCREKWC PAFNKDYFSG GILSSQRSET TNHSISRRLS KTAGLCDFYS  300
SFVSVISEWR SKENGEDFWR AQGVPAMMME HVKLLSHARE VYTIEIYFLF EEQFMKGSAC  360
HQEMVLNDGR QQKYHVWQPD IDIIRHEVSF NAANLDISCS CKLMSELGIL CCHCIRILHV  420
HCVSSIPDKY ILKRWTKKVI DGRNVNIDSM IYNVGVPPSI WVFDISRKFQ RLVVSSQDSS  480
VARKLCDEAV DDVKKKVEAE VGHVHIEECG VSSSSGGVQN PSSRRLKGER NKRRSGVIEK  540
KYSLARGRRS AANKAALSTK GVVQSLVLEN ISKLAGDGYL VHPSSSSSDF VQFNKGLDDN  600
VGVD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	4e-37	FAR1 family protein