PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019171155.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 592aa MW: 65627.5 Da PI: 5.01

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019171155.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.3	3.2e-14	398	440	7	54
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ErrRR++iN++f L +l+P++ +K +K++iL +++eY+k+L XP_019171155.1 398 VSERRRREKINERFMILSSLIPSS-----GKADKVSILDETIEYLKDL 440 57*******************9.....9**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 592 aa Download sequence
MIWCRVLEWG DGYYNGDIKT RKTVQAAETS TDQLGLQRTE HLRELYGSLL AGETNLHAKI 60 PSAALSPEDL TDTEWYFLVC MSFVFNIGQG LPGKALAKNQ TVWLCNAPQA DGRVFTRTLL 120 AKSACIQTVV CFPHLGGVIE LGVTELVKED RGLVQHLKTS YLDIPCPIVP GVPNYISTDD 180 GNDRDIVNSK PNQDTLEASP KEENIDSPDN SSNGLEADEF KVKGATAEAS QPPNCQIVED 240 DISNCIHNST NSSDCISQNY ENPEEKVSDF LNDEEMVEHS PPENQECNQE SLVPLDNRGQ 300 GHDVHYQSIL SSVLKSSHQF ILGPYFRNGN RESSFGGWKK EISTNIQTLR IETSQRLLKK 360 VLSGVARMVC IPDTRKEGDG KNDPRRLEAD ESDRSRVVSE RRRREKINER FMILSSLIPS 420 SGKADKVSIL DETIEYLKDL KTRVWEAESQ KEGFELNARM GRNCKDCDDA ERTSDNCGTN 480 IIDNNKKPSS KKRKASETEG ASKSIAKNGS ARDVAVSVTD EDVTIEIGCQ WSEGVLIKII 540 QALNNLHLDC ETIQSSNGDD GTLSVSVKCK MKASKLTSPS PALIRQALKR VI

Sequence ? help Back to Top

Protein Sequence Length: 592 aa Download sequence

MIWCRVLEWG DGYYNGDIKT RKTVQAAETS TDQLGLQRTE HLRELYGSLL AGETNLHAKI  60
PSAALSPEDL TDTEWYFLVC MSFVFNIGQG LPGKALAKNQ TVWLCNAPQA DGRVFTRTLL  120
AKSACIQTVV CFPHLGGVIE LGVTELVKED RGLVQHLKTS YLDIPCPIVP GVPNYISTDD  180
GNDRDIVNSK PNQDTLEASP KEENIDSPDN SSNGLEADEF KVKGATAEAS QPPNCQIVED  240
DISNCIHNST NSSDCISQNY ENPEEKVSDF LNDEEMVEHS PPENQECNQE SLVPLDNRGQ  300
GHDVHYQSIL SSVLKSSHQF ILGPYFRNGN RESSFGGWKK EISTNIQTLR IETSQRLLKK  360
VLSGVARMVC IPDTRKEGDG KNDPRRLEAD ESDRSRVVSE RRRREKINER FMILSSLIPS  420
SGKADKVSIL DETIEYLKDL KTRVWEAESQ KEGFELNARM GRNCKDCDDA ERTSDNCGTN  480
IIDNNKKPSS KKRKASETEG ASKSIAKNGS ARDVAVSVTD EDVTIEIGCQ WSEGVLIKII  540
QALNNLHLDC ETIQSSNGDD GTLSVSVKCK MKASKLTSPS PALIRQALKR VI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	400	405	ERRRRE
2	401	406	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	1e-145	bHLH family protein