PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019171064.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 440aa MW: 49664.5 Da PI: 6.7089

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019171064.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	42	3.1e-13	109	183	17	90
FAR1 17 skskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++ +k +r++ +++++ C+++g++++ ++ t+ +rr+r+++r+gCkak++vk++++ + v+++e+ H+H+++ XP_019171064.1 109 DSIRK-SRDDVVVEKHVICNRHGFKQRVSSIakTTLARRRRVTNRVGCKAKVVVKLKSNCLYFVHSFEERHTHSMC 183 44444.58888***********9987765558899***********************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence
MWCATVDLES FGICNKNNST DVCGEGSGGV CDEGNPTDVG VECSGDGCDE GNATDVGVGG 60 SGVRCDEDYL TDVGVQGSSC ELEISPGLTK YWRPVCANSL KPLFGQQQDS IRKSRDDVVV 120 EKHVICNRHG FKQRVSSIAK TTLARRRRVT NRVGCKAKVV VKLKSNCLYF VHSFEERHTH 180 SMCSIIARQF LKVNRSLDAE HQMFIASCDQ ANIGSVRSYR LFKEIVGERS NVGATNVDFK 240 NFKRDLMAYI LNGDAQLFID TLFKMRELCE AFDFEYDVDE VDQLSRVFWA DAVSRKNFAL 300 FGDVVSFDAT YHTNRYKLVF VPFTGIDNHK RSITFGAGLL TREDVDSYVW LLEKFKKTMC 360 HDPIFVVTDQ DPALKVAVDR VFDTSKHRFC MWHIMCKVGE KVGPILSKDE VFRKKLNGIV 420 WNKSLDSKSF EDAWSCIMEE

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence

MWCATVDLES FGICNKNNST DVCGEGSGGV CDEGNPTDVG VECSGDGCDE GNATDVGVGG  60
SGVRCDEDYL TDVGVQGSSC ELEISPGLTK YWRPVCANSL KPLFGQQQDS IRKSRDDVVV  120
EKHVICNRHG FKQRVSSIAK TTLARRRRVT NRVGCKAKVV VKLKSNCLYF VHSFEERHTH  180
SMCSIIARQF LKVNRSLDAE HQMFIASCDQ ANIGSVRSYR LFKEIVGERS NVGATNVDFK  240
NFKRDLMAYI LNGDAQLFID TLFKMRELCE AFDFEYDVDE VDQLSRVFWA DAVSRKNFAL  300
FGDVVSFDAT YHTNRYKLVF VPFTGIDNHK RSITFGAGLL TREDVDSYVW LLEKFKKTMC  360
HDPIFVVTDQ DPALKVAVDR VFDTSKHRFC MWHIMCKVGE KVGPILSKDE VFRKKLNGIV  420
WNKSLDSKSF EDAWSCIMEE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-52	FAR1 family protein