PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019170960.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 605aa MW: 69179.8 Da PI: 8.4128

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019170960.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.5	2.6e-19	82	175	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY +YA +vGF+vr+s+ kk+ + g+i k++ vCs+e +++++ k+ t+k++r+ +++r+gC akl++k +++gk++v++++ H H l+ XP_019170960.1 82 KFYTNYAGTVGFDVRRSSDKKN-KYGHILKKQVVCSREVYKDTKGKEtgeerTTKQKRRLTTNRVGCVAKLVLKFHSEGKYVVKTFVDRHRHYLC 175 6**************99998.6777************99998998888888889999***************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 605 aa Download sequence
MEVACAFTAK TVKKSGWGRV HGLSTSEFSG VGGAVNNEEM DNGGDCVMDV SPGGTKTWIP 60 ECDASLKPFE GQIFDTMEDG IKFYTNYAGT VGFDVRRSSD KKNKYGHILK KQVVCSREVY 120 KDTKGKETGE ERTTKQKRRL TTNRVGCVAK LVLKFHSEGK YVVKTFVDRH RHYLCEEKFK 180 RFMKVNRKID IGHQEFITNC GKVNVGASKS FDIFAEMVGR PENVGATQQD FKNYRRELLA 240 YMKEKDIQMV ISQYLEKKND CLDMYFEYDV NEKDQLARVF WADRRSRIHY GAFGDVVSFD 300 ATYQTNRYNL VFVPFTGIDN HKRCVTFGAG LIDKEDVESY SWILRNFKNA MGSTPPLVIT 360 DQDPAMKVAI ETEFPGTRHR YCMWHIMTKV GDKVGNTLAK NEEFWRALNA VVWNEEATII 420 GFESAWHEVI QKYGLLENRW LKLGKQRDKH LQLSAACNGQ TPPLKTLLRI EREAATVYTL 480 TVFSDVQKEI CEGWFTCRVR SYTEVEGVKT YVVEDGTNKR YTVIVEDGSN NTSCTCRLYT 540 RIGLLCRHIT NVIEELETTL CNKEFSRAED NAKQTVMEAY CGVPKPDTIK VHPSQSRRPK 600 GLASE

Sequence ? help Back to Top

Protein Sequence Length: 605 aa Download sequence

MEVACAFTAK TVKKSGWGRV HGLSTSEFSG VGGAVNNEEM DNGGDCVMDV SPGGTKTWIP  60
ECDASLKPFE GQIFDTMEDG IKFYTNYAGT VGFDVRRSSD KKNKYGHILK KQVVCSREVY  120
KDTKGKETGE ERTTKQKRRL TTNRVGCVAK LVLKFHSEGK YVVKTFVDRH RHYLCEEKFK  180
RFMKVNRKID IGHQEFITNC GKVNVGASKS FDIFAEMVGR PENVGATQQD FKNYRRELLA  240
YMKEKDIQMV ISQYLEKKND CLDMYFEYDV NEKDQLARVF WADRRSRIHY GAFGDVVSFD  300
ATYQTNRYNL VFVPFTGIDN HKRCVTFGAG LIDKEDVESY SWILRNFKNA MGSTPPLVIT  360
DQDPAMKVAI ETEFPGTRHR YCMWHIMTKV GDKVGNTLAK NEEFWRALNA VVWNEEATII  420
GFESAWHEVI QKYGLLENRW LKLGKQRDKH LQLSAACNGQ TPPLKTLLRI EREAATVYTL  480
TVFSDVQKEI CEGWFTCRVR SYTEVEGVKT YVVEDGTNKR YTVIVEDGSN NTSCTCRLYT  540
RIGLLCRHIT NVIEELETTL CNKEFSRAED NAKQTVMEAY CGVPKPDTIK VHPSQSRRPK  600
GLASE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-57	FAR1 family protein