PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019170575.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

AP2

Protein Properties

Length: 372aa MW: 42011.8 Da PI: 8.7548

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019170575.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.9	7.9e-16	47	107	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkklege 56 s y+GV++++++gr++A+++d ++n k+ ++++lg ++ +e Aa a++ a++k++g+ XP_019170575.1 47 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDDEEAAAHAYDLAALKYWGH 107 57*****************999955656446***********************997 PP
2	AP2	50.5	5.1e-16	149	200	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g XP_019170575.1 149 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAVAYDMAAIEYRG 200 89**99******99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence
MGKLSQQKST TTIHATTTVG ATATSTVLKP KRTRKTVPRD SPPQRSSIYR GVTRHRWTGR 60 YEAHLWDKNC WNESQNKKGR QVYLGAYDDE EAAAHAYDLA ALKYWGHETI LNFPLATYEK 120 ELKLMEGQSR EEYIGSLRRK SSGFSRGVSK YRGVARHHHN GRWEARIGRV FGNKYLYLGT 180 YATQEEAAVA YDMAAIEYRG LNAVTNFDLS RYIKWLRPNN NNNTNNEVNP SIGTNLVSTQ 240 NHSLCSNSSS SLSGSGLYNH HQQPLLSRDE QKNHTVITTE VSLAQSQPTS TTSALGLLFQ 300 SSKFKEMMEM TLAAECSAPA VVEASIPPRR SFPEDIKTCF EDQDFASYGD DMTTFDNFNS 360 LMQPILQLDF DF

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence

MGKLSQQKST TTIHATTTVG ATATSTVLKP KRTRKTVPRD SPPQRSSIYR GVTRHRWTGR  60
YEAHLWDKNC WNESQNKKGR QVYLGAYDDE EAAAHAYDLA ALKYWGHETI LNFPLATYEK  120
ELKLMEGQSR EEYIGSLRRK SSGFSRGVSK YRGVARHHHN GRWEARIGRV FGNKYLYLGT  180
YATQEEAAVA YDMAAIEYRG LNAVTNFDLS RYIKWLRPNN NNNTNNEVNP SIGTNLVSTQ  240
NHSLCSNSSS SLSGSGLYNH HQQPLLSRDE QKNHTVITTE VSLAQSQPTS TTSALGLLFQ  300
SSKFKEMMEM TLAAECSAPA VVEASIPPRR SFPEDIKTCF EDQDFASYGD DMTTFDNFNS  360
LMQPILQLDF DF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	3e-99	AP2 family protein