PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019170564.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 730aa MW: 83093.1 Da PI: 8.2279

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019170564.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.9	8.3e-19	52	151	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY++YAk++GF+vr++++k+ +g+it++ Cs+ g++ ++ + +++++r+r+++r+gC+ak++ k+ + + +ev+++e+ H XP_019170564.1 52 QFYHTYAKSTGFDVRRASEKRD-PHGKITWKYVLCSRAGFKLPTGDGdgigilttdhKNTTKRRRVTNRVGCNAKIVFKRLDGDSFEVNSIEERH 145 6**************99988.7788************99989**999899999**************************** PP FAR1 86 nHelap 91 +H+l++ XP_019170564.1 146 THSLCT 151 **85 PP

Sequence ? help Back to Top
Protein Sequence Length: 730 aa Download sequence
MAETNNNENE PCSTGCVINI SPGTTKYWTP ECEATKKPFA GQVFTSLEAA IQFYHTYAKS 60 TGFDVRRASE KRDPHGKITW KYVLCSRAGF KLPTGDGDGI GILTTDHKNT TKRRRVTNRV 120 GCNAKIVFKR LDGDSFEVNS IEERHTHSLC TPISRPFMKA NRKLDLGHQN FIINCSNANI 180 GSCKSYTLYE EMVGGFENVG ATITDFGNFK RDIMAYIEDT DAQLVIDKYT EKKNASPDFY 240 FAHDVDELDQ LCRIFWADPQ ARHNFNIFGD TMSFDATYGT NRYKLVFVPF TGVDHHKKSV 300 TFAAGLIARE DVDSYTWLLE HFKNAMGKVP TCTVIDQDPA MKAAIARVFD TTRHRYCMWH 360 IMTKVCKKVG PTLAKSDGFL TSLNNVVWNE LQTIEEFETA WQTVMKDYNL VEHKWFNHLF 420 EIRTQWIPVF FKDVFMAGLL RTTSRSESEN SVFSKCTSPH LSLTEFFTKF EKAIYKQRHY 480 QLQLNAECEG KFPELKTPLL LERQAATTYT VEVFYDVQKE IFDACFSSQV VKKTNEGCTL 540 KVDIEDLNKS TYSVEYNSTN RTVQCTCNMF HRIGIQCKHV FLAFKAANLD RIPSQYILPR 600 WSRNTCWNHT QIYPNTNQNG STEHVDGATG MGTVFDEFFK CVGYAYGNND KITELAHLLK 660 AHREKSTESI PQDETRASKS DIIRSICGST SSPNIKVHPP AIAKNKGSSK RFKSTKEIAS 720 TLTAKGISSY

Sequence ? help Back to Top

Protein Sequence Length: 730 aa Download sequence

MAETNNNENE PCSTGCVINI SPGTTKYWTP ECEATKKPFA GQVFTSLEAA IQFYHTYAKS  60
TGFDVRRASE KRDPHGKITW KYVLCSRAGF KLPTGDGDGI GILTTDHKNT TKRRRVTNRV  120
GCNAKIVFKR LDGDSFEVNS IEERHTHSLC TPISRPFMKA NRKLDLGHQN FIINCSNANI  180
GSCKSYTLYE EMVGGFENVG ATITDFGNFK RDIMAYIEDT DAQLVIDKYT EKKNASPDFY  240
FAHDVDELDQ LCRIFWADPQ ARHNFNIFGD TMSFDATYGT NRYKLVFVPF TGVDHHKKSV  300
TFAAGLIARE DVDSYTWLLE HFKNAMGKVP TCTVIDQDPA MKAAIARVFD TTRHRYCMWH  360
IMTKVCKKVG PTLAKSDGFL TSLNNVVWNE LQTIEEFETA WQTVMKDYNL VEHKWFNHLF  420
EIRTQWIPVF FKDVFMAGLL RTTSRSESEN SVFSKCTSPH LSLTEFFTKF EKAIYKQRHY  480
QLQLNAECEG KFPELKTPLL LERQAATTYT VEVFYDVQKE IFDACFSSQV VKKTNEGCTL  540
KVDIEDLNKS TYSVEYNSTN RTVQCTCNMF HRIGIQCKHV FLAFKAANLD RIPSQYILPR  600
WSRNTCWNHT QIYPNTNQNG STEHVDGATG MGTVFDEFFK CVGYAYGNND KITELAHLLK  660
AHREKSTESI PQDETRASKS DIIRSICGST SSPNIKVHPP AIAKNKGSSK RFKSTKEIAS  720
TLTAKGISSY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	116	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-90	FAR1 family protein