PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019170520.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

SBP

Protein Properties

Length: 364aa MW: 40988.9 Da PI: 7.5684

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019170520.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	119	2.3e-37	134	210	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv+gC++dls+ k yh+rh+vC hsk+ +++++g+eqrfCqqCsrfh l efD++krsCr+rLa hn+rrrk++ XP_019170520.1 134 ICQVDGCKMDLSSSKYYHQRHRVCVEHSKTIKAILHGVEQRFCQQCSRFHLLAEFDDDKRSCRKRLACHNKRRRKSR 210 5**************************************************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MESWGHALDN EGSLLFSEYG VEVNSFSDFD KNMIIAPSYY GEINEGDADF MELWTQNNNN 60 NNNSNTDNNF ASKIMMFSDD DMMNNNWKRI PAIESVSAEC CKGYGGLEIG QSASAKKAKI 120 ITDFNPCSQF VPIICQVDGC KMDLSSSKYY HQRHRVCVEH SKTIKAILHG VEQRFCQQCS 180 RFHLLAEFDD DKRSCRKRLA CHNKRRRKSR FHTQWDASLL LDMASQGASP FLIPEILSGN 240 LNFCQQQENN TKSNNSPAAG NLVEQELSGG EISGGGAFSL LSATQTCRAD HRRPGIQKSK 300 NCMNYYSKKC LKASRERSGP ATTIDLQQLS THLRRVEQQR GSEQVKNQET IVSSNNVFCC 360 FTSI

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MESWGHALDN EGSLLFSEYG VEVNSFSDFD KNMIIAPSYY GEINEGDADF MELWTQNNNN  60
NNNSNTDNNF ASKIMMFSDD DMMNNNWKRI PAIESVSAEC CKGYGGLEIG QSASAKKAKI  120
ITDFNPCSQF VPIICQVDGC KMDLSSSKYY HQRHRVCVEH SKTIKAILHG VEQRFCQQCS  180
RFHLLAEFDD DKRSCRKRLA CHNKRRRKSR FHTQWDASLL LDMASQGASP FLIPEILSGN  240
LNFCQQQENN TKSNNSPAAG NLVEQELSGG EISGGGAFSL LSATQTCRAD HRRPGIQKSK  300
NCMNYYSKKC LKASRERSGP ATTIDLQQLS THLRRVEQQR GSEQVKNQET IVSSNNVFCC  360
FTSI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	1e-33	SBP family protein