PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019170502.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 262aa    MW: 27922 Da    PI: 6.5362
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019170502.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.5e-10146193455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L+ l+P +    +k   Ka++L + ++Y++sLq
  XP_019170502.1 146 SHSLAERARREKISERMKILQNLVPGC----NKVIGKASVLDEIINYVQSLQ 193
                     8*************************9....677*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MLNDGGAYPG SSNAQFNMAE IWPFPISTGG ATSPYALAPA EEDVNAMSDP MVIDRRVSQS  60
GGDGGGRKRK EEDESAKGGA GASTSGNGLS EDDSKRLKTG GQNKIPRSKA DGEGASGKQA  120
EQAAKAAEPP KDYIHVRARR GQATDSHSLA ERARREKISE RMKILQNLVP GCNKVIGKAS  180
VLDEIINYVQ SLQHQVEFLS MKLEAVNSRI PPGIEGLPSK DFPPQIFDTS GLAFGSQATR  240
EYGSSTSPDW LHMQTGGGFE RT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.13e-75bHLH family protein