PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019170290.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 613aa MW: 67917.6 Da PI: 6.3031

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019170290.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.7	4e-52	9	145	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lp GfrF+Ptd+el+++yL++k++g++ e+ +vi+evd++k+ePwdLp + +k+++ ew+fF++ d+ky++g+r nrat++gyWkatgkd++++ XP_019170290.1 9 LPLGFRFRPTDQELISHYLRRKINGRHSEV-QVIPEVDVCKWEPWDLPslSVIKTDDPEWFFFCPLDRKYPNGNRCNRATDAGYWKATGKDRAIK 102 699**********************999.99***********6447888889********************************* PP NAM 94 sk.....kgel.....vglkktLvfykgrapkgektdWvmheyrl 128 ++ + + +g+kktLvfykgrapkge+t+W+mheyr+ XP_019170290.1 103 TRkstgsD--QsntplIGIKKTLVFYKGRAPKGERTNWIMHEYRA 145 98666541..155677*************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 613 aa Download sequence
MSGLSMDALP LGFRFRPTDQ ELISHYLRRK INGRHSEVQV IPEVDVCKWE PWDLPSLSVI 60 KTDDPEWFFF CPLDRKYPNG NRCNRATDAG YWKATGKDRA IKTRKSTGSD QSNTPLIGIK 120 KTLVFYKGRA PKGERTNWIM HEYRATEPDL DGTRPGQGAF VLCRLFHKSD DRKCDEAEPS 180 GSSPATNKSS PDDVSSNLFQ EAALLDRQPQ KANVTSIVML PVESRMSDVV EHSTEEIKNE 240 VTPVGVDMMF HESKHESNSC IDLGLHISSP FPDDFGNDHN GLDFQDGTCE QDVSLSELLG 300 HFQGHENYFS EETTWQNNLS SERLILQDTL LEQTSPAPFQ TQVSPNDPDS ILHTDDTHTH 360 TNPVGHASDV AGGSGLRIRM RQRQNRPTSR NIITRGTAPR RLNLVLEQEP HSVSSANVAE 420 AGSFGSEVHE AQSLVAEVQA SLTSFKTKAS EESYGDNSAT NHRTTVDGET GTKAWMPQLF 480 NQASSEHNVC QVSAAKRILQ MEQVTVSVSS GKAGIGHGRR AVIGEDHEGN ECTSSTGSRE 540 TTQEHDTTVR LLSKQGSNHH LSKIGFSFSS LVSPVLCGLS FSRLYAVSIY VIVAVSIFCI 600 MIWKYPSKAV VQR

Sequence ? help Back to Top

Protein Sequence Length: 613 aa Download sequence

MSGLSMDALP LGFRFRPTDQ ELISHYLRRK INGRHSEVQV IPEVDVCKWE PWDLPSLSVI  60
KTDDPEWFFF CPLDRKYPNG NRCNRATDAG YWKATGKDRA IKTRKSTGSD QSNTPLIGIK  120
KTLVFYKGRA PKGERTNWIM HEYRATEPDL DGTRPGQGAF VLCRLFHKSD DRKCDEAEPS  180
GSSPATNKSS PDDVSSNLFQ EAALLDRQPQ KANVTSIVML PVESRMSDVV EHSTEEIKNE  240
VTPVGVDMMF HESKHESNSC IDLGLHISSP FPDDFGNDHN GLDFQDGTCE QDVSLSELLG  300
HFQGHENYFS EETTWQNNLS SERLILQDTL LEQTSPAPFQ TQVSPNDPDS ILHTDDTHTH  360
TNPVGHASDV AGGSGLRIRM RQRQNRPTSR NIITRGTAPR RLNLVLEQEP HSVSSANVAE  420
AGSFGSEVHE AQSLVAEVQA SLTSFKTKAS EESYGDNSAT NHRTTVDGET GTKAWMPQLF  480
NQASSEHNVC QVSAAKRILQ MEQVTVSVSS GKAGIGHGRR AVIGEDHEGN ECTSSTGSRE  540
TTQEHDTTVR LLSKQGSNHH LSKIGFSFSS LVSPVLCGLS FSRLYAVSIY VIVAVSIFCI  600
MIWKYPSKAV VQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	1e-120	NAC family protein