PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019169945.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 744aa MW: 86151.9 Da PI: 4.9095

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019169945.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70	5.6e-22	137	221	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etr gC a++++++ ++++w+v++++leHnH++ XP_019169945.1 137 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTMKEAS-----TRRKETRRGCLAMIRLRLVDSNRWRVDEVKLEHNHPFD 221 69**************************************98877.....8999*****************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 744 aa Download sequence
MHCKMEEGLE NSEQVIGDEI SDHEVESEGV FDIEGNDLEN DGDHILMIDS NDLDNTAEQV 60 LEFESSGHDN SEHVLEFGST DEGHNTNQIL EIQSNEPNCT DGDATIFHDQ DGGTSQKKSY 120 LPPVVGMEFE SYEDAYNYYN CYAKELGFAI RVKSSWTKRN SKEKRGAVLC CNCEGFKTMK 180 EASTRRKETR RGCLAMIRLR LVDSNRWRVD EVKLEHNHPF DPERAQNCKS HKKMDSVAKR 240 KLEPAVDVEV RTIKLYRSPT VDTLNYGSSN ERDVGNCIDA SKRLKVNNGD FQLICNFFSR 300 MQLTNPNFFY IMDLNDEGNV RNVFWIDSRS RTSYSYFGDV VLVDTTCLSK SYEIPLVVFF 360 GVNHHGEALL LGCGLLVDES FETYIWVLRA WLTCMSGRPP QTIITDRCKA LQNAVSEVFP 420 RAHHCLCLSL VMQSIAETLV ELEQPELFYT VLNRVVYNSL KVDEFEIAWE EMVQHFGISS 480 HEWLQKLYED RERWAPVYLK DTFFAGMSVS QPGVSASHFF EGFVHKETNL KEFFDIYELI 540 LQRKHQKEAL DDLESKEFNP VLRTRCNYEL RLSEMYTKEI FLSFQVEVAL MSTCFSVSQI 600 HTNAPVITYM IKEQDTAGDT RDERNYEVMY DRVGQDVRCM CSCFNFKGYL CRHALCVLDH 660 NGVEEMPNQY ILSRWRKDFK RLYSPDLGSN NIDISNPVQW FDHLYRRALQ VVEEGMASQD 720 HYMVAWQAFQ ESLNKVRLVA DRHG

Sequence ? help Back to Top

Protein Sequence Length: 744 aa Download sequence

MHCKMEEGLE NSEQVIGDEI SDHEVESEGV FDIEGNDLEN DGDHILMIDS NDLDNTAEQV  60
LEFESSGHDN SEHVLEFGST DEGHNTNQIL EIQSNEPNCT DGDATIFHDQ DGGTSQKKSY  120
LPPVVGMEFE SYEDAYNYYN CYAKELGFAI RVKSSWTKRN SKEKRGAVLC CNCEGFKTMK  180
EASTRRKETR RGCLAMIRLR LVDSNRWRVD EVKLEHNHPF DPERAQNCKS HKKMDSVAKR  240
KLEPAVDVEV RTIKLYRSPT VDTLNYGSSN ERDVGNCIDA SKRLKVNNGD FQLICNFFSR  300
MQLTNPNFFY IMDLNDEGNV RNVFWIDSRS RTSYSYFGDV VLVDTTCLSK SYEIPLVVFF  360
GVNHHGEALL LGCGLLVDES FETYIWVLRA WLTCMSGRPP QTIITDRCKA LQNAVSEVFP  420
RAHHCLCLSL VMQSIAETLV ELEQPELFYT VLNRVVYNSL KVDEFEIAWE EMVQHFGISS  480
HEWLQKLYED RERWAPVYLK DTFFAGMSVS QPGVSASHFF EGFVHKETNL KEFFDIYELI  540
LQRKHQKEAL DDLESKEFNP VLRTRCNYEL RLSEMYTKEI FLSFQVEVAL MSTCFSVSQI  600
HTNAPVITYM IKEQDTAGDT RDERNYEVMY DRVGQDVRCM CSCFNFKGYL CRHALCVLDH  660
NGVEEMPNQY ILSRWRKDFK RLYSPDLGSN NIDISNPVQW FDHLYRRALQ VVEEGMASQD  720
HYMVAWQAFQ ESLNKVRLVA DRHG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1 family protein