PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019169799.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 541aa MW: 58036.9 Da PI: 6.3783

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019169799.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.8	1.4e-11	427	469	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A+eY+k+L XP_019169799.1 427 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 469 79*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence
MIAQKGISLW PLHPHPFLSC FLHPSSPTLL FFSLNSPLQR EKKESWGTKE MLSRVTSMVW 60 MDGKEEEQTG SWAQNNNNGC TNGGGHHHHS GGAGGGLAGK EEMEMATIKS MLEAEDVEWY 120 MASHHHSHNG APMQGHGSIS FSTNFSEPDN NLILNPVDSS SSCSPSSASV FNALDPSQVH 180 YFLPHKPTIM THPLDQGGFD LGCESGFLET QALSGLSRGG GVLGGGFGDL SCQNFLGAPN 240 LSSVPQFGST HLLQIPHNGE GGGGFGPLGF GEGCVNLNVN VNVNGNENEN ALFLNRSKLL 300 KPLDNFASIG AQPTLFQKRA ALRKNLGNSS GNLALLGGEI GHTCSNLDSG FDNKNEVNER 360 KRKGSNGGDE LEDVSIDGSN FNYDSDELVE NSGKVDESVK NGGISSSNAT GADQKGKKKG 420 LPAKNLMAER RRRKKLNDRL YMLRSVVPKI SKMDRASILG DAIEYLKELL QKINDLHNEL 480 ESTPPCSALT PNSSFYPLTP TASALPCRIK EEISPTAFAS PLSSPTGQPA RVEVRDLVVL 540 C

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence

MIAQKGISLW PLHPHPFLSC FLHPSSPTLL FFSLNSPLQR EKKESWGTKE MLSRVTSMVW  60
MDGKEEEQTG SWAQNNNNGC TNGGGHHHHS GGAGGGLAGK EEMEMATIKS MLEAEDVEWY  120
MASHHHSHNG APMQGHGSIS FSTNFSEPDN NLILNPVDSS SSCSPSSASV FNALDPSQVH  180
YFLPHKPTIM THPLDQGGFD LGCESGFLET QALSGLSRGG GVLGGGFGDL SCQNFLGAPN  240
LSSVPQFGST HLLQIPHNGE GGGGFGPLGF GEGCVNLNVN VNVNGNENEN ALFLNRSKLL  300
KPLDNFASIG AQPTLFQKRA ALRKNLGNSS GNLALLGGEI GHTCSNLDSG FDNKNEVNER  360
KRKGSNGGDE LEDVSIDGSN FNYDSDELVE NSGKVDESVK NGGISSSNAT GADQKGKKKG  420
LPAKNLMAER RRRKKLNDRL YMLRSVVPKI SKMDRASILG DAIEYLKELL QKINDLHNEL  480
ESTPPCSALT PNSSFYPLTP TASALPCRIK EEISPTAFAS PLSSPTGQPA RVEVRDLVVL  540
C

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	417	435	KKKGLPAKNLMAERRRRKK
2	429	436	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	1e-69	bHLH family protein