PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019169796.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ARF | ||||||||
Protein Properties | Length: 852aa MW: 94238.2 Da PI: 6.8541 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.7 | 1.1e-23 | 147 | 248 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+lt sd++++g +++ +++a+e+ ++ ++ s++l+ +d++g +W++++i+r++++r++l++GW+ Fv++++L +gD ++F + +++ XP_019169796.1 147 FCKTLTASDTSTHGGFSVLRRHADEClppldMSRQPPSQELVARDLHGSEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGENG 239 99*****************************444556679************************************************..44999 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 el+v+v+r+ XP_019169796.1 240 ELLVGVRRT 248 9*****996 PP | |||||||
2 | Auxin_resp | 117.5 | 1.1e-38 | 273 | 355 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t+++F+v+Y+Pr+s++eF+++ +++++++k+++s+GmRfkm+fe+e+++e++++Gt+vg++d+d rWp+SkWr+Lk XP_019169796.1 273 AWHAIQTNTMFTVYYKPRTSPAEFIIPHDQYMESVKNNYSIGMRFKMRFEGEEAPEQKFTGTIVGIEDCDHQRWPESKWRCLK 355 89*******************************************************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 852 aa Download sequence |
MATSEVTAAR GYAESSCGSC APPPDGGRSV SGAGKDVERA LYTELWRACA GPLVTVPREQ 60 ELVFYFPQGH IEQVEASTNQ VAEQQMPIYK LPWKILCRVV NVLLKAEADT DEVYAQVTLM 120 PEENQDENAI KKETVLPSPP HVQVHSFCKT LTASDTSTHG GFSVLRRHAD ECLPPLDMSR 180 QPPSQELVAR DLHGSEWRFR HIFRGQPRRH LLQSGWSVFV SSKRLVAGDA FIFLRGENGE 240 LLVGVRRTMR HQSNIPSSVI SSHSMHLGVL ATAWHAIQTN TMFTVYYKPR TSPAEFIIPH 300 DQYMESVKNN YSIGMRFKMR FEGEEAPEQK FTGTIVGIED CDHQRWPESK WRCLKVRWDE 360 TSTIPRPDRV SPWQIEPSLC PSALNPLPVP RSKRPRSNAF PSSPDSSVLT REGSSKLSVD 420 PSSASGFSRV LQGQELSTLR GAFAESKQSE SSEKPTPCPP SVNDEKLDDL YASHRCSSNK 480 RLSLGRPESS FTALLSSGFG MYINSSHGLS FQSGDQMPVP ASLVKRQTKC QEGEFNLLGK 540 PWPAVPSASG LSLNLMDSSS KPHGQGSDTP YQAPGDSRCG GLSEYSMLPG HRLDSQQGNW 600 FMPPTSYLQI PAHSRELMPK PVSVQQHEAF EPKKGNCKLF GIPLISNSSS MGPPMLSENA 660 MTESIVHSDL GISSHQSPAI ESEQRSEQPK DSKVINGVTG NEKEKELQTF HVGGRGRVGK 720 VCSGSTRSCT KVHKQGTALG RSVYLAKYNN YDELIAELDN LFDFNGELKA RNSNWMVVYT 780 DGEGDMMLVG DDPWQEFCAM VHKIHLYTKE EVQHMKPGTL TSKDEDTSSI AGLDTKEVKV 840 LLPPPKSSAE EC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | ARF family protein |