PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019169752.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NF-X1

Protein Properties

Length: 1128aa MW: 122171 Da PI: 8.0789

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019169752.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	18.2	5.5e-06	316	334	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C+++CH GpC+ C+ XP_019169752.1 316 CGRHQCERICHVGPCDHCQ 334 ****************996 PP
2	zf-NF-X1	17.2	1.1e-05	438	455	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG H+C+k CH G+C pC XP_019169752.1 438 CGVHRCEKVCHSGDCAPC 455 ****************** PP
3	zf-NF-X1	18.6	4.1e-06	534	552	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C++lCH G CppC XP_019169752.1 534 CGQHSCESLCHSGHCPPCL 552 ******************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 1128 aa Download sequence
MNFSVQSNRS DNSRRGRNYP GQTARQEWVP RGSSSTTAPT ATVTTTVESP AVAVDNLSSV 60 GNGRELDDRS VPQVYRSRNY TGPRRNVVRY ANQRRDRGTG RDKDSGERNK AEKVKEPDHN 120 NESKQLNDPN LPQLVQEIQE KLLKGTVECM ICYDMVRRSA SIWSCSSCYS IFHLNCIKKW 180 ARAPTSVDLS AEKNQGFNWR CPGCQYVQLT SSKDIRYICF CRKRQDPPSD LYLTPHSCGE 240 PCGKPLEKEV PGSGMSKEDL CPHHCVLQCH PGPCPPCKAF APPRSCPCGK KVITTRCSDR 300 KSVLTCGQRC DKLLACGRHQ CERICHVGPC DHCQVLVNAS CFCKKKTEVV LCGDMAVKGE 360 IKVENGVFSC SSRCEKKLSC GNHVCHEICH PGPCGDCALS PIKVKTCWCG KTSLTEARNS 420 CLDPIPTCSE VCTKTLRCGV HRCEKVCHSG DCAPCHVPVT QRCRCGSTSR TVECYRTFAE 480 DDIFTCDRPC GRKKSCGRHR CSERCCPLSN PNHSLTGDWD PHFCSMPCGK KLRCGQHSCE 540 SLCHSGHCPP CLETIFNDLT CACGRTSIPP PLPCGTPSPS CQYPCSIPQP CGHSSTHSCH 600 FGDCPPCAVP IAKECIGGHV VLRNIPCGSK DIRCNKLCGK TRQCGLHACA RTCHPAPCDS 660 SAGANAGSRA SCGQTCGAPR RDCRHTCTAL CHPSTPCPDT RCEFPVSISC SCGRITASVP 720 CDAGGSNGGH SADSIFEASI LQKLTSPLQP VEANGKKVPL GQRKLSCDDE CAKMEKKKVL 780 ADAFGINSSN SDALHFGENT AVSEVLSDLL RRDSKWVFSV EERCKFLVLG RGRGGVNALK 840 VHVFCPMLKE KRDAVTLIAE RWKLTVSAAG WEPKRFVVVH ATPKSKAPAR ILGAKGCTAS 900 SMLQPAIFDP LVDMDPRLVV ALFDLPRDAD ISALVLRFGG ECELVWLNDK NALAVFSDPA 960 RASAAMRRLD QGSAYYGAVG VPQIGAAPAT SNAWGGSSVN KDAGGGPMLK DNAWKQAVVQ 1020 ELNQRETTWG SEEWTNSSSS NMEPPGVWKG KEAPALAASS NRWSVLDTET APSSSATTSS 1080 TVKGSLKKSA PNQVSDSETE AQSSDLQGQP QHEGNAADVV DNWEEACD

Sequence ? help Back to Top

Protein Sequence Length: 1128 aa Download sequence

MNFSVQSNRS DNSRRGRNYP GQTARQEWVP RGSSSTTAPT ATVTTTVESP AVAVDNLSSV  60
GNGRELDDRS VPQVYRSRNY TGPRRNVVRY ANQRRDRGTG RDKDSGERNK AEKVKEPDHN  120
NESKQLNDPN LPQLVQEIQE KLLKGTVECM ICYDMVRRSA SIWSCSSCYS IFHLNCIKKW  180
ARAPTSVDLS AEKNQGFNWR CPGCQYVQLT SSKDIRYICF CRKRQDPPSD LYLTPHSCGE  240
PCGKPLEKEV PGSGMSKEDL CPHHCVLQCH PGPCPPCKAF APPRSCPCGK KVITTRCSDR  300
KSVLTCGQRC DKLLACGRHQ CERICHVGPC DHCQVLVNAS CFCKKKTEVV LCGDMAVKGE  360
IKVENGVFSC SSRCEKKLSC GNHVCHEICH PGPCGDCALS PIKVKTCWCG KTSLTEARNS  420
CLDPIPTCSE VCTKTLRCGV HRCEKVCHSG DCAPCHVPVT QRCRCGSTSR TVECYRTFAE  480
DDIFTCDRPC GRKKSCGRHR CSERCCPLSN PNHSLTGDWD PHFCSMPCGK KLRCGQHSCE  540
SLCHSGHCPP CLETIFNDLT CACGRTSIPP PLPCGTPSPS CQYPCSIPQP CGHSSTHSCH  600
FGDCPPCAVP IAKECIGGHV VLRNIPCGSK DIRCNKLCGK TRQCGLHACA RTCHPAPCDS  660
SAGANAGSRA SCGQTCGAPR RDCRHTCTAL CHPSTPCPDT RCEFPVSISC SCGRITASVP  720
CDAGGSNGGH SADSIFEASI LQKLTSPLQP VEANGKKVPL GQRKLSCDDE CAKMEKKKVL  780
ADAFGINSSN SDALHFGENT AVSEVLSDLL RRDSKWVFSV EERCKFLVLG RGRGGVNALK  840
VHVFCPMLKE KRDAVTLIAE RWKLTVSAAG WEPKRFVVVH ATPKSKAPAR ILGAKGCTAS  900
SMLQPAIFDP LVDMDPRLVV ALFDLPRDAD ISALVLRFGG ECELVWLNDK NALAVFSDPA  960
RASAAMRRLD QGSAYYGAVG VPQIGAAPAT SNAWGGSSVN KDAGGGPMLK DNAWKQAVVQ  1020
ELNQRETTWG SEEWTNSSSS NMEPPGVWKG KEAPALAASS NRWSVLDTET APSSSATTSS  1080
TVKGSLKKSA PNQVSDSETE AQSSDLQGQP QHEGNAADVV DNWEEACD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10170.1	0.0	NF-X1 family protein