PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019169280.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LSD

Protein Properties

Length: 353aa MW: 38783.6 Da PI: 4.3751

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019169280.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	38.8	1.5e-12	264	288	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg Cr lLsYPrG++ V+C+ C+tV XP_019169280.1 264 CGTCRQLLSYPRGSKWVQCSACQTV 288 ************************9 PP
2	zf-LSD1	46.3	7.1e-15	302	326	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC +lL+YP+GApsV+C++C++V XP_019169280.1 302 CGGCTVLLMYPYGAPSVKCSSCHFV 326 ***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MGAEEGMESN PKTFVEEEEE DEDDDEGPPP GFDSIAIRSQ LENMDVEDED EDDDDDDGPP 60 PGFAEPHQPE TPPLSATSHS DTQRLRNQGL SDVEIGKKQN ETKYEEDRPP LGSQSTSPKQ 120 PHQSMTSSEL VSDTQMRSIE EDDDGPPPGW QWNPQQQPLP ESIPPPGLQS APSSSIQTGI 180 IQEDDDGPPP GWQLISSQQR QPQTIPSLLP QSVAPSDIEM ATKQQSIKNE EKKLRTDRGP 240 SQRIISRLPP AALQISSEVG QLVCGTCRQL LSYPRGSKWV QCSACQTVNL ALEGHQIGQV 300 KCGGCTVLLM YPYGAPSVKC SSCHFVTRIG AHNRRPHLAA QQARRQRPSH QAH

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MGAEEGMESN PKTFVEEEEE DEDDDEGPPP GFDSIAIRSQ LENMDVEDED EDDDDDDGPP  60
PGFAEPHQPE TPPLSATSHS DTQRLRNQGL SDVEIGKKQN ETKYEEDRPP LGSQSTSPKQ  120
PHQSMTSSEL VSDTQMRSIE EDDDGPPPGW QWNPQQQPLP ESIPPPGLQS APSSSIQTGI  180
IQEDDDGPPP GWQLISSQQR QPQTIPSLLP QSVAPSDIEM ATKQQSIKNE EKKLRTDRGP  240
SQRIISRLPP AALQISSEVG QLVCGTCRQL LSYPRGSKWV QCSACQTVNL ALEGHQIGQV  300
KCGGCTVLLM YPYGAPSVKC SSCHFVTRIG AHNRRPHLAA QQARRQRPSH QAH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	2e-34	LSD family protein