PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019169208.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 324aa    MW: 34570.4 Da    PI: 6.0819
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019169208.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.98.7e-16235270134
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++Cg ++  Tp++Rrgp g+++LCnaCGl+++ kg
  XP_019169208.1 235 CRHCGISSkaTPMMRRGPAGPRSLCNACGLKWANKG 270
                     *****9999***********************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    
MYGMGTPLST AVLHQDAEQH HPQIADEEED NDDSGADGCG GEDSIDEASP HVQFEPHSHS  60
QALHNGSMDA AAPMNGVDSV SPRALYAPGG SEIVVHPTAG GGADQLTLSF QGEVYVFDAV  120
SPEKVQAVLL LLGGYEVPSA IPTVGVPSQS QRGVGEYPGR LSQHQRAAFL DRFREKRKER  180
CFDKKIRYTV RKEVALRMQR KKGQFTSTKS VSDEAGSSSA DCNSVSGQED QEIFCRHCGI  240
SSKATPMMRR GPAGPRSLCN ACGLKWANKG ILRDLSKVPA TAVQDHAIKI GGQNNGEANG  300
SHAMTIAGDA IMLNYDNPAP TAEK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-88GATA family protein