PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019169108.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

AP2

Protein Properties

Length: 424aa MW: 47007.1 Da PI: 8.3126

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019169108.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.9	2.2e-17	71	130	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n+ k+ k+++lg ++ +e Aa+a++ a++k++g XP_019169108.1 71 SVYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 130 78*****************766644468557***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence
MASSSSEPTA KPEGSSGNDV CGGETSETAG PTGSDQLSLY RVLKKAKKER VCTAKERISK 60 MPPCTAGKRS SVYRGVTRHR WTGRYEAHLW DKSTWNQNQN KKGKQVYLGA YDDEEAAARA 120 YDLAALKYWG PGTLINFPVT DYTRDLEEMQ NLSREDYLAS LRRKSSGFSR GISKYRPLSS 180 RWDSQFGRLQ GADYFSSKHH GGDVTADNEY VAGYCMDQKI DLSSYIKWWG ASKARQADSY 240 VKGTSEETKH GCSEDTGNEA SELAVQPTEP YEMPRLGLSQ KGKSHKSSTT SAMSILSQCA 300 AYKNLQEKVA KKKEKVENDE NENKNTINKI DYGKTIEKSI HDAGNERLGA LFGSSVGLTI 360 NRNIHPLTPI LSAPLLTNYN SIDALTDPVL WTSLVPVFPS GSSRATEVTK HESGSDYTFF 420 QQED

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence

MASSSSEPTA KPEGSSGNDV CGGETSETAG PTGSDQLSLY RVLKKAKKER VCTAKERISK  60
MPPCTAGKRS SVYRGVTRHR WTGRYEAHLW DKSTWNQNQN KKGKQVYLGA YDDEEAAARA  120
YDLAALKYWG PGTLINFPVT DYTRDLEEMQ NLSREDYLAS LRRKSSGFSR GISKYRPLSS  180
RWDSQFGRLQ GADYFSSKHH GGDVTADNEY VAGYCMDQKI DLSSYIKWWG ASKARQADSY  240
VKGTSEETKH GCSEDTGNEA SELAVQPTEP YEMPRLGLSQ KGKSHKSSTT SAMSILSQCA  300
AYKNLQEKVA KKKEKVENDE NENKNTINKI DYGKTIEKSI HDAGNERLGA LFGSSVGLTI  360
NRNIHPLTPI LSAPLLTNYN SIDALTDPVL WTSLVPVFPS GSSRATEVTK HESGSDYTFF  420
QQED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41710.1	1e-133	AP2 family protein