PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019169105.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

AP2

Protein Properties

Length: 427aa MW: 47312.5 Da PI: 8.041

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019169105.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.8	2.3e-17	71	130	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n+ k+ k+++lg ++ +e Aa+a++ a++k++g XP_019169105.1 71 SVYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 130 78*****************766644468557***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence
MASSSSEPTA KPEGSSGNDV CGGETSETAG PTGSDQLSLY RVLKKAKKER VCTAKERISK 60 MPPCTAGKRS SVYRGVTRHR WTGRYEAHLW DKSTWNQNQN KKGKQVYLGA YDDEEAAARA 120 YDLAALKYWG PGTLINFPVT DYTRDLEEMQ NLSREDYLAS LRRKSSGFSR GISKYRPLSS 180 SRWDSQFGRL QGADYFSSKH HGDCGDVTAD NEYVAGYCMD QKIDLSSYIK WWGASKARQA 240 DSYVKGTSEE TKHGCSEDTG NEASELAVQP TEPYEMPRLG LSQKGKSHKS STTSAMSILS 300 QCAAYKNLQE KVAKKKEKVE NDENENKNTI NKIDYGKTIE KSIHDAGNER LGALFGSSVG 360 LTINRNIHPL TPILSAPLLT NYNSIDALTD PVLWTSLVPV FPSGSSRATE VTKHESGSDY 420 TFFQQED

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence

MASSSSEPTA KPEGSSGNDV CGGETSETAG PTGSDQLSLY RVLKKAKKER VCTAKERISK  60
MPPCTAGKRS SVYRGVTRHR WTGRYEAHLW DKSTWNQNQN KKGKQVYLGA YDDEEAAARA  120
YDLAALKYWG PGTLINFPVT DYTRDLEEMQ NLSREDYLAS LRRKSSGFSR GISKYRPLSS  180
SRWDSQFGRL QGADYFSSKH HGDCGDVTAD NEYVAGYCMD QKIDLSSYIK WWGASKARQA  240
DSYVKGTSEE TKHGCSEDTG NEASELAVQP TEPYEMPRLG LSQKGKSHKS STTSAMSILS  300
QCAAYKNLQE KVAKKKEKVE NDENENKNTI NKIDYGKTIE KSIHDAGNER LGALFGSSVG  360
LTINRNIHPL TPILSAPLLT NYNSIDALTD PVLWTSLVPV FPSGSSRATE VTKHESGSDY  420
TFFQQED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41710.1	1e-132	AP2 family protein